PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000694.1_g000026.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 543aa MW: 61846 Da PI: 5.6664

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000694.1_g000026.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152	2.9e-47	89	214	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWk 84 ppG+rF+P+d+elv +yL+kk+ +++l+ + i ev++y+++P++L +++++ +ekewyfF++rd+ky++g r+nra+ +gyWk Rmu_sc0000694.1_g000026.1 89 PPGYRFNPRDDELVRYYLQKKIMDEPLPP-NKIMEVNLYRHNPETLAERYETyGEKEWYFFTPRDRKYRNGFRPNRAAGDGYWK 171 9***********************999.77**********9655544889************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg dk++ s ++ +vg++k Lvfy+g+ pkg+kt+W+mheyr+ Rmu_sc0000694.1_g000026.1 172 ATGADKTIRS-GNVEVGCRKALVFYRGKPPKGKKTNWIMHEYRV 214 *****9.999**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MELVQQSHPH PKAFVTQVTA YGGSPSPIKQ LQSIPNEADR KASLTGTHDA IVVSSVAAEV 60 DQFSDVEEEL NNFNNNQKRQ QDSFLNSFPP GYRFNPRDDE LVRYYLQKKI MDEPLPPNKI 120 MEVNLYRHNP ETLAERYETY GEKEWYFFTP RDRKYRNGFR PNRAAGDGYW KATGADKTIR 180 SGNVEVGCRK ALVFYRGKPP KGKKTNWIMH EYRVPDSPDS RPPKRTENDM RLDNWVLCRI 240 YKKADNKNSK SQSRNHVEDS VEESISTLLP DNMDMEMETN GQVDNPQALE SEKAYPYPIV 300 HPPLEFDRAY PNYAFPYPGG RPLCALVNNN MNNMLHHHRF QPVSLNSGDS YANMGQMQQA 360 CGTYSPMQFP DQNCGVQFSD QKRGVQFSDQ RFIMQPVDVT SGSMVCTDDQ KCGVQFPDEK 420 FIMQSLDVTS ESMVCTDEAC SDQKCGRQFP DKKFIVQSPD CSPQPMTFSH EKSGKSGQPD 480 DAVDSRPSSV PPLPDQKSTQ QGIGKPLLPP SDQGLRYVEE SNEDHNLMFG YPPFVSLETF 540 SWP

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MELVQQSHPH PKAFVTQVTA YGGSPSPIKQ LQSIPNEADR KASLTGTHDA IVVSSVAAEV  60
DQFSDVEEEL NNFNNNQKRQ QDSFLNSFPP GYRFNPRDDE LVRYYLQKKI MDEPLPPNKI  120
MEVNLYRHNP ETLAERYETY GEKEWYFFTP RDRKYRNGFR PNRAAGDGYW KATGADKTIR  180
SGNVEVGCRK ALVFYRGKPP KGKKTNWIMH EYRVPDSPDS RPPKRTENDM RLDNWVLCRI  240
YKKADNKNSK SQSRNHVEDS VEESISTLLP DNMDMEMETN GQVDNPQALE SEKAYPYPIV  300
HPPLEFDRAY PNYAFPYPGG RPLCALVNNN MNNMLHHHRF QPVSLNSGDS YANMGQMQQA  360
CGTYSPMQFP DQNCGVQFSD QKRGVQFSDQ RFIMQPVDVT SGSMVCTDDQ KCGVQFPDEK  420
FIMQSLDVTS ESMVCTDEAC SDQKCGRQFP DKKFIVQSPD CSPQPMTFSH EKSGKSGQPD  480
DAVDSRPSSV PPLPDQKSTQ QGIGKPLLPP SDQGLRYVEE SNEDHNLMFG YPPFVSLETF  540
SWP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	3e-61	NAC family protein