PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000677.1_g000019.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 421aa MW: 47361.4 Da PI: 6.3764

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000677.1_g000019.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.7e-52	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksg 81 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g Rmu_sc0000677.1_g000019.1 15 VPPGFRFHPTEEELLQYYLRKKVSNQRIDL-DVIRDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAG 97 69**************************.9***********964444222455********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg+dk + s + + +g++ktLvfykgrap+g+k+dW+mheyrl Rmu_sc0000677.1_g000019.1 98 FWKATGRDKVISS-NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 *****9999.8889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MTENVSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSNQ RIDLDVIRDV DLNKLEPWDI 60 QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVISS NCRRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNTSSI TSVSITVVGE AAEEGWVVCR IFKKKNLHKS 180 LSSPIMSTTI SSSITAELTR SSSQMFDDDD DQEGAFEEML QYIGTKTCKE EINDHHLHPI 240 NTGIKNHING YHDHDDRFLK LPSLESPNST SSQNYYQPII NHEDMVIDQN EGTVINQHLS 300 YQHVDDSASL TNWAALDRLV ASQLNGGHET GSSRQFACLI EPTINAFCSS NSTTDHELQL 360 PSTLRSSTSS NSSSKSYHAT HQDYNTNEID LWSTVAAASR LQSSLPLPSS DAVCHASNAP 420 I

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MTENVSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSNQ RIDLDVIRDV DLNKLEPWDI  60
QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVISS NCRRIGMRKT  120
LVFYKGRAPH GQKSDWIMHE YRLDDNTSSI TSVSITVVGE AAEEGWVVCR IFKKKNLHKS  180
LSSPIMSTTI SSSITAELTR SSSQMFDDDD DQEGAFEEML QYIGTKTCKE EINDHHLHPI  240
NTGIKNHING YHDHDDRFLK LPSLESPNST SSQNYYQPII NHEDMVIDQN EGTVINQHLS  300
YQHVDDSASL TNWAALDRLV ASQLNGGHET GSSRQFACLI EPTINAFCSS NSTTDHELQL  360
PSTLRSSTSS NSSSKSYHAT HQDYNTNEID LWSTVAAASR LQSSLPLPSS DAVCHASNAP  420
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-109	NAC family protein