PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000677.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 348aa MW: 39790.3 Da PI: 6.1504

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000677.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.2e-52	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksg 81 +ppGfrFhPt+eel+++yL+kk+++++++l +vi+evd++k+ePwd ++k++ +++wyfFs++dkky+tg+r+nrat++g Rmu_sc0000677.1_g000011.1 15 VPPGFRFHPTEEELLQYYLRKKISSQRIDL-DVIREVDLNKLEPWDVQEKCNIgttPQNDWYFFSHKDKKYPTGTRTNRATAAG 97 69**************************.9***********964444222455********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg+dk + s + + +g++ktLvfykgrap+g+k+dW+mheyrl Rmu_sc0000677.1_g000011.1 98 FWKATGRDKVIRS-NCKRIGMRKTLVFYKGRAPRGQKSDWIMHEYRL 143 *******99.8889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MTENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKISSQ RIDLDVIREV DLNKLEPWDV 60 QEKCNIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIRS NCKRIGMRKT 120 LVFYKGRAPR GQKSDWIMHE YRLDDNTSRI TDVSVVVGEA SQEEGWVVCR IFKKKNLHKT 180 IDSPILIAPT SSITTDNITS IFVSSCDYND EETLKHILDC MGSRTCKEET NEANNSLIMN 240 HIHGFHDDDD RFLNLPSLES PNSSAENDDP VGHQSVDSVG LTNWAALDRF VAAQLDGRET 300 MTYPESGKCF STDHHDYHDH ELQLPTTLRS SNSSSNEIEL WPTFAPHR

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MTENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKISSQ RIDLDVIREV DLNKLEPWDV  60
QEKCNIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIRS NCKRIGMRKT  120
LVFYKGRAPR GQKSDWIMHE YRLDDNTSRI TDVSVVVGEA SQEEGWVVCR IFKKKNLHKT  180
IDSPILIAPT SSITTDNITS IFVSSCDYND EETLKHILDC MGSRTCKEET NEANNSLIMN  240
HIHGFHDDDD RFLNLPSLES PNSSAENDDP VGHQSVDSVG LTNWAALDRF VAAQLDGRET  300
MTYPESGKCF STDHHDYHDH ELQLPTTLRS SNSSSNEIEL WPTFAPHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-117	NAC family protein