PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000652.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 304aa    MW: 33534 Da    PI: 7.594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000652.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-0592114123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC+ C++ Fs++  L  H++ H
  Rmu_sc0000652.1_g000003.1  92 FKCNFCNRNFSTSQALGGHQNAH 114
                                89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MEIPVLEVCA NSSEASSIIS AASDKKNTMK MKEINIAGES QQQQKPEVVA EEAEANVELA  60
LFKANPPEEE ASEELNGVRG QQKKEKEDTR VFKCNFCNRN FSTSQALGGH QNAHKPERQL  120
AKRRSQGLDV GGGFGLGQSY YPYNFSPYSS STLSPHYSLY GSRSTSLGVR LDSIIHKPTY  180
TPWYDRLGGG AGWSRPASSS LLQNHPINDH RLSFQGAQNN INTNELGLGV RTFNASSRLE  240
ESSTSTRTVR NFGGNWNLNA INNNNNKKPP LPPFSGSTDL LSRVERPRKN DQDGDDDIDL  300
TLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.17e-14C2H2 family protein