PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000574.1_g000048.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 1134aa    MW: 128060 Da    PI: 8.287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000574.1_g000048.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.7e-517158421128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                l+pGfrFhPtdeelv +yLk+kv +k++++ ++i++vdiyk+ePwdL  k ++k++++e+yfFs  dkky +g r nrat+ gy
  Rmu_sc0000574.1_g000048.1 715 LAPGFRFHPTDEELVIYYLKRKVCRKPFKF-NAISDVDIYKSEPWDLAcKsSLKSRDQEYYFFSALDKKYGNGARMNRATHLGY 797
                                579**************************9.89**************85347788999************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wkatg+d++v++ ++++vg+kktLvf++grap+g++t+Wvmheyrl
  Rmu_sc0000574.1_g000048.1 798 WKATGNDRPVKH-NNKTVGMKKTLVFHSGRAPDGKRTNWVMHEYRL 842
                                ************.999****************************98 PP
2NAM40.49.2e-13108711325196
                        NAM   51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96  
                                 +k++++e+yfFs  dkky +g r nrat+ gyWkatg+d++v++++
  Rmu_sc0000574.1_g000048.1 1087 LKSRDQEYYFFSALDKKYGNGARMNRATHLGYWKATGNDRPVKHNN 1132
                                 567899************************************9854 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1134 aa     Download sequence    
MFWNDDVKVE EGTTSQHHIH VMVDGGPGNP RWRLTGFYGF ARTVDRDKSC EKKDGPIRAE  60
RQMRGFREAQ GISHQVILIM CQYCYKLVLF LFPNLLVITA SNLKHIGLQH EECDGVVHQA  120
WQTDVSGLPM YQLSKKIAYT RMHLDAWQRK TFKGRQMQML GVRARLEELL DTTLSDAVIM  180
EKKQLFERLQ TLLSQEESFW RQSSNVTWLK DGDRNTGYFH WKAANRNRKN TIHGLFNEAG  240
EWCEDDEGLE RVSVFVPGRL ITDNIIVANE LAHFVHNKRD GGDGCMALKL DLSKAYDRME  300
WVFLKRVMER FGFDLQKQEL GLLPGIEICS EAPRVNHLLF ANDSMIYANA TLEDCYQIQD  360
VIETYGRASG QLVNFDKSSI VLSKNVSDVM KDEVSSLLGV EVVTSHEKYL GLPTYVGRKK  420
TATFQYIKEN LSKKVSNWQG KFLSGAGRDI LIRVVAQALP AYAMSVFKLT KNFCEDLEQL  480
CAKFWLGSTL DKRKIHWKTW KALCNPKEEG GLGFRSLSEF NSAMLAKQAW RVISNPQSLI  540
ALLFKAKYYP EGSFWTASSH ASPSYSWRSI FSTRDLIRKG TYWQIGDGTL VNVWRDSWVL  600
GLLDCKPREG NLAMNEVNRE LETTLHLCHD CPFTRQVLQT HGVLSQVYYN PHFAHLDLLE  660
WISSCARDLS LQLLDHHNHN HHRRRRRGIK LMGHELTPST ITPPLSKPPA APTALAPGFR  720
FHPTDEELVI YYLKRKVCRK PFKFNAISDV DIYKSEPWDL ACKSSLKSRD QEYYFFSALD  780
KKYGNGARMN RATHLGYWKA TGNDRPVKHN NKTVGMKKTL VFHSGRAPDG KRTNWVMHEY  840
RLVDTEMEKP GNGVPQDAYV LCRVFHKSNI GPPNGHRYAP FVEEEWDDEK LTFVPGEVAR  900
DDTVVSRDSV GNRCDAVKVG NDHDSVVGGN HRDAPMVGNG HDSVVGGATR DAVVANGCHA  960
VVVANGRDTV VGNGHHAAVG GNGHAAACIE EKVHAAVDID QKDHVAAVVE QKDNASASIE  1020
QKDHDVCLGG GPSVDGHVQD TMMEVDGHGT TEEGNVHGSI RGNGHDGRSA GNYFVQVCAF  1080
HSSKSSLKSR DQEYYFFSAL DKKYGNGARM NRATHLGYWK ATGNDRPVKH NNKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.17e-95NAC family protein