PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0000573.1_g000063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 453aa MW: 51242.1 Da PI: 6.6304 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 381.1 | 1.3e-116 | 54 | 452 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar...svselykalppsetsekn.......s 74 ++lL++cAe +s+ d++ a++l++ ls +sp+gd+++Rl++ f++AL+ l e+++ +++++s ++ + Rmu_sc0000573.1_g000063.1 54 RQLLISCAELISQLDFSSARRLISILSSSnSSPYGDSTERLVHQFVRALSLSLPAveaAPREIVSVAAATASSASTstsntllE 137 799***********************99879*******************9997721122233333322222222222234440 PP GRAS 75 seelaal.............klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp........ 136 + ++++++P+++fshltaNqaIlea+++ +++Hi+Dfdi++G+QWp+L+qaLa+R+ Rmu_sc0000573.1_g000063.1 138 ------VeteaeeealqscyLTLNQITPFIRFSHLTANQAILEAIDSThHAIHILDFDIKHGVQWPPLMQALAERSygsssslh 215 ......1444445555443344***********************998799*************************65555444 PP GRAS 137 egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrllde 216 +++p+lRiT+ g+ + + l++tgerL +fA++lg++f+f+++ + ++ l++ +L + ++EalaVn+vl lhrll + Rmu_sc0000573.1_g000063.1 216 HPAPMLRITATGR----DLTLLRRTGERLLRFAQSLGLTFHFRPIvllnDVAMIDYLNPASLGLFSDEALAVNCVLYLHRLLTD 295 459**********....9**************************9654434468889*************************77 PP GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 ++ + +L+ +++l+Pk+v+v+e+ea+hns+ Fl+rf+ea+++y a+f slea+lp++s+er vE++++grei +v a+ Rmu_sc0000573.1_g000063.1 296 DARDLH---LFLDKIRGLNPKIVTVAEREANHNSPMFLNRFVEAVDHYGAIFGSLEATLPPNSRERLAVEQVWFGREIADVAAA 376 666666...9*************************************************************************9 PP GRAS 301 egaerre..rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++rr+ rhe++e+W+++++++GF++vpls +a +qaklllr ++ s+gy++++ ++s++lgW++rpL+svS+W Rmu_sc0000573.1_g000063.1 377 DDNQRRKqlRHERYENWEMMMRRSGFSNVPLSPFALSQAKLLLRLHYpSEGYQLHSLKDSFFLGWMNRPLFSVSSW 452 9888665459****************************************************************** PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 453 aa Download sequence |
MGSFNSSHHQ RIVPQQQEDQ DPEIHPDLQL YNQQHHQYQF AQQPLLMSRG LTSRQLLISC 60 AELISQLDFS SARRLISILS SSNSSPYGDS TERLVHQFVR ALSLSLPAVE AAPREIVSVA 120 AATASSASTS TSNTLLEVET EAEEEALQSC YLTLNQITPF IRFSHLTANQ AILEAIDSTH 180 HAIHILDFDI KHGVQWPPLM QALAERSYGS SSSLHHPAPM LRITATGRDL TLLRRTGERL 240 LRFAQSLGLT FHFRPIVLLN DVAMIDYLNP ASLGLFSDEA LAVNCVLYLH RLLTDDARDL 300 HLFLDKIRGL NPKIVTVAER EANHNSPMFL NRFVEAVDHY GAIFGSLEAT LPPNSRERLA 360 VEQVWFGREI ADVAAADDNQ RRKQLRHERY ENWEMMMRRS GFSNVPLSPF ALSQAKLLLR 420 LHYPSEGYQL HSLKDSFFLG WMNRPLFSVS SWN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-115 | GRAS family protein |