PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000556.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 782aa MW: 88412.9 Da PI: 8.2442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000556.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	149	171	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++F+++ +L+ H + H Rmu_sc0000556.1_g000004.1 149 PCEVCHQRFPDNITLQIHRENvH 171 5*****************98877 PP
2	zf-C2H2	11	0.0013	174	193	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++Cg sF + +L++H Rmu_sc0000556.1_g000004.1 174 HICEICGLSFYSDTLLQTHK 193 68*****************6 PP
3	zf-C2H2	16.6	2.1e-05	200	223	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++Cg sF++ +L++H ++ H Rmu_sc0000556.1_g000004.1 200 HTCEICGVSFRSDAQLQSHRKSkH 223 79*******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence
MSMPTASNGD VPSACDVPNT NGSKVPSMVP NRPSVLGNGV PSEANESNIN VRRSRQSLGS 60 PSIKDDQIIE LVSNWCRTAV KETRTRGLEG SNLPIPGTRG DMAGDDVLPP QIHMKGGEKK 120 KKKKKQKKKK GTTGDMSRPR PDCHDMSPPC EVCHQRFPDN ITLQIHRENV HVLHICEICG 180 LSFYSDTLLQ THKQCVHTLH TCEICGVSFR SDAQLQSHRK SKHPDLKKKK MMKKKKKKKR 240 QKKKKKNEEE EEEEKAKAEG EHASSFPIEK TMNKAPSPSI SGESFPMEKV DQAESILIMV 300 KFDMDDSFSG AIYEIKLDQL QPLEHGKSVG GFNTDPSTLP MLKPVAELFG KGWKTEELFL 360 FDCARIGSLS KLYVLVNQIP CPYLKPVTPE YAFAFNRSLV SELISPPKTT KQYCLVISAY 420 GMLYYLAQPL CFPQIQEPSF ERYDPASDSW ESLPPFPDYS LDQAQTEMTG YAVCYGYILL 480 SMQTEKKYEA VAFHIHSRTW HKVKTSPENP YYYPFYGRAV VLGSTIYALA HNLDLVLVFS 540 FWWDSDKDGD IVKRRHFLGT PLSLLITAKC HPPRRLLGDR TQNLVHLGGR YFCVVQTGQN 600 IDSSEYQYMC ATTFRIAGDG QEMHIKTVRS SVFRVAIEGN DEFEVQFSFT PDCNDIEPVE 660 EQYCVSSALV ERESAWTSDV KEDFFSFPTG PKLGLEAFRA KKEDEKKVFI STTSPETPLL 720 SKGSFGYDSD GEHASWVLVL KRGPRFACSC GPSNDSLERQ CERKTQIPRY VHRGLRRFQT 780 RC

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence

MSMPTASNGD VPSACDVPNT NGSKVPSMVP NRPSVLGNGV PSEANESNIN VRRSRQSLGS  60
PSIKDDQIIE LVSNWCRTAV KETRTRGLEG SNLPIPGTRG DMAGDDVLPP QIHMKGGEKK  120
KKKKKQKKKK GTTGDMSRPR PDCHDMSPPC EVCHQRFPDN ITLQIHRENV HVLHICEICG  180
LSFYSDTLLQ THKQCVHTLH TCEICGVSFR SDAQLQSHRK SKHPDLKKKK MMKKKKKKKR  240
QKKKKKNEEE EEEEKAKAEG EHASSFPIEK TMNKAPSPSI SGESFPMEKV DQAESILIMV  300
KFDMDDSFSG AIYEIKLDQL QPLEHGKSVG GFNTDPSTLP MLKPVAELFG KGWKTEELFL  360
FDCARIGSLS KLYVLVNQIP CPYLKPVTPE YAFAFNRSLV SELISPPKTT KQYCLVISAY  420
GMLYYLAQPL CFPQIQEPSF ERYDPASDSW ESLPPFPDYS LDQAQTEMTG YAVCYGYILL  480
SMQTEKKYEA VAFHIHSRTW HKVKTSPENP YYYPFYGRAV VLGSTIYALA HNLDLVLVFS  540
FWWDSDKDGD IVKRRHFLGT PLSLLITAKC HPPRRLLGDR TQNLVHLGGR YFCVVQTGQN  600
IDSSEYQYMC ATTFRIAGDG QEMHIKTVRS SVFRVAIEGN DEFEVQFSFT PDCNDIEPVE  660
EQYCVSSALV ERESAWTSDV KEDFFSFPTG PKLGLEAFRA KKEDEKKVFI STTSPETPLL  720
SKGSFGYDSD GEHASWVLVL KRGPRFACSC GPSNDSLERQ CERKTQIPRY VHRGLRRFQT  780
RC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	KKKKKKK
2	119	130	KKKKKKKQKKKK
3	120	131	KKKKKKKQKKKK
4	120	128	KKKKKKQKK
5	121	132	KKKKKKKQKKKK
6	226	244	LKKKKMMKKKKKKKRQKKK
7	227	246	KKKKMMKKKKKKKRQKKKKK
8	227	257	KKKKMMKKKKKKKRQKKKKKNEEEEEEEKAK
9	228	247	KKKKMMKKKKKKKRQKKKKK
10	233	239	KKKKKKK
11	233	244	KKKKKKKQKKKK
12	233	246	KKKKKKKRQKKKKK
13	234	240	KKKKKKK
14	234	245	KKKKKKKQKKKK
15	235	246	KKKKKKKQKKKK
16	235	243	KKKKKKQKK
17	236	243	KKKKRQKK