PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000550.1_g000022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 119aa MW: 12958.7 Da PI: 11.1383 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.1 | 5.8e-29 | 35 | 99 | 1 | 65 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 a+g+kdrhsk++T++g+Rd RvRl a++ ++f+d qd+LG+ ++sk+++WL+++ak+ i el Rmu_sc0000550.1_g000022.1 35 ATGRKDRHSKVCTAKGPRDHRVRLAAHTTIQFYDAQDRLGYYRPSKAVDWLIKKAKAVINELQPW 99 589**********************************************************9887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence |
MTSSSAASRL GLGIRTSSSS TASEIVEARG HILRATGRKD RHSKVCTAKG PRDHRVRLAA 60 HTTIQFYDAQ DRLGYYRPSK AVDWLIKKAK AVINELQPWN PNSISVQTTS SPTVPISAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.2 | 2e-40 | TCP family protein |