PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000546.1_g000026.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 425aa MW: 47106.7 Da PI: 5.9089

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000546.1_g000026.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.6e-10	233	280	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Rmu_sc0000546.1_g000026.1 233 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 280 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MNRALPEMLN CMNAPGGLVA GNCTDMTVLD RQRTRMRWQH DQFLQQPQQQ HHQGYFGGNE 60 LNGVFNHVPI EASQVQNFQG LIGLGGDLGM GQAVKPDLSS ENGWTELGYG SCGFEMNNIS 120 RTFSCPPKVA AETESNNAVA PAKNSSPAGK ESFKKRKADK AQNNKAVAED DSSDKRMKGC 180 AEEGDSKITE QNSTKNNDRE SSADTSKENS KASEVQKPDY IHVRARRGQA TDSHSLAERV 240 RREKISERMK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN 300 IDDLFTKEMF PANIANFPTI GMSSEMTSSA YLQFNHIQQL LQCSGLENGI TSPDSALLRR 360 SISTPLSIPE TFVDTSCFTQ VQPPTTWDAD IQNLFNVEFH QGRTAQFPSQ PFTGSIEASN 420 LKMEM

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MNRALPEMLN CMNAPGGLVA GNCTDMTVLD RQRTRMRWQH DQFLQQPQQQ HHQGYFGGNE  60
LNGVFNHVPI EASQVQNFQG LIGLGGDLGM GQAVKPDLSS ENGWTELGYG SCGFEMNNIS  120
RTFSCPPKVA AETESNNAVA PAKNSSPAGK ESFKKRKADK AQNNKAVAED DSSDKRMKGC  180
AEEGDSKITE QNSTKNNDRE SSADTSKENS KASEVQKPDY IHVRARRGQA TDSHSLAERV  240
RREKISERMK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN  300
IDDLFTKEMF PANIANFPTI GMSSEMTSSA YLQFNHIQQL LQCSGLENGI TSPDSALLRR  360
SISTPLSIPE TFVDTSCFTQ VQPPTTWDAD IQNLFNVEFH QGRTAQFPSQ PFTGSIEASN  420
LKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	1e-67	bHLH family protein