PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000532.1_g000022.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33142.3 Da    PI: 7.2816
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000532.1_g000022.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.8e-151150342
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               i ++s r  +f kR+ g+ KK +ELS+LCd+ +++ii++ 
  Rmu_sc0000532.1_g000022.1 11 IGSESARRASFNKRKDGLVKKVSELSTLCDVPACIIIYGR 50
                               678999********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MPRARVKLAW IGSESARRAS FNKRKDGLVK KVSELSTLCD VPACIIIYGR GSNQPIVWPD  60
RPRAEEVIRR YLSLPGYVRC KKTLSQESYL KEKVAKMEEK HNKTVRSNTV KDMEDLMRQG  120
QNGKPLYELD INQTYGLLNF VEEKMKEIQN QFAFSEQAGG PSYTSVHNEP ANNLGVPLGT  180
GMEWPYGIFG VGGDGSSSGT DMGFPMLPQC YGNNIGGSSS VNVVPNMIPY NGNIGNFGGD  240
GSVGLPQVNY LGNDITGNGS QMGYFGMLPQ YYGANVITSN GSIIGWTIGN TNGANSAGEG  300
DAADLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.19e-28M-type_MADS family protein