PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000512.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 113aa    MW: 13046.2 Da    PI: 10.8388
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000512.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.3e-30959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien++ rqvtfskRr+gilKKA+ELSvLCdaeva+i+fs++gkly y+s
  Rmu_sc0000512.1_g000020.1  9 KRIENSISRQVTFSKRRTGILKKAFELSVLCDAEVALIVFSPSGKLYQYAS 59
                               79***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MGRRKVELKR IENSISRQVT FSKRRTGILK KAFELSVLCD AEVALIVFSP SGKLYQYASH  60
DINRTIAMYR SEIGLPQSSN PACSTRIGTM ELRRINETEE LRRSIQKLEM RLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.21e-33MIKC_MADS family protein