PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000497.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 460aa MW: 51155 Da PI: 7.2047

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000497.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169	1.6e-52	23	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wk Rmu_sc0000497.1_g000002.1 23 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKFDPWDLPKLAASGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWK 105 579*************************.89***********8888899************************* PP NAM 85 atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Rmu_sc0000497.1_g000002.1 106 ATGTDRPIYSSegnSNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 152 ******96655556*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MDQERSSSCD MSAADQDKID EVMLPGFRFH PTDEELVGFY LKRKIQQRPL SIELIKQLDI 60 YKFDPWDLPK LAASGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSEGNS 120 NKCIGLKKSL VFYKGRAAKG VKTDWMMHEF RLPSLTDSSV LPPKRSFMDK IAIPANDSWA 180 ICRIFKKTNS SAHQRAISHH SWVSQTLPEP NTFQDHVLGS SRLGAQTTST AQYSGNNIDT 240 QQISTSTSTS TLSPGDYYAN NSYKTLHPSI ACNLKPYHQY YPISNAGEYF NPNFTFSPLE 300 SPAAKCSVDV SSLLLNMSSS VLGDFGTKLA SAESSTTFDF SSTTGSQEQQ CNNGFSSLTT 360 LPHHDVMQGN QLGVVGSHDH SIDALMKNIT NHVNSNAIET DDHGHWESSL TSLRSSIGFP 420 FMNSLPVIPL NIGGGDAWKS NLTWDSSPCP SEMSTTRCYS

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MDQERSSSCD MSAADQDKID EVMLPGFRFH PTDEELVGFY LKRKIQQRPL SIELIKQLDI  60
YKFDPWDLPK LAASGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSEGNS  120
NKCIGLKKSL VFYKGRAAKG VKTDWMMHEF RLPSLTDSSV LPPKRSFMDK IAIPANDSWA  180
ICRIFKKTNS SAHQRAISHH SWVSQTLPEP NTFQDHVLGS SRLGAQTTST AQYSGNNIDT  240
QQISTSTSTS TLSPGDYYAN NSYKTLHPSI ACNLKPYHQY YPISNAGEYF NPNFTFSPLE  300
SPAAKCSVDV SSLLLNMSSS VLGDFGTKLA SAESSTTFDF SSTTGSQEQQ CNNGFSSLTT  360
LPHHDVMQGN QLGVVGSHDH SIDALMKNIT NHVNSNAIET DDHGHWESSL TSLRSSIGFP  420
FMNSLPVIPL NIGGGDAWKS NLTWDSSPCP SEMSTTRCYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	2e-98	NAC family protein