PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000459.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 923aa    MW: 102843 Da    PI: 4.7232
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000459.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.83.6e-21267319154
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                                k+r++Wt++LH +F  a++ L G +kA Pk+i+++m+++ Lt+ +v+SHLQkY+
  Rmu_sc0000459.1_g000011.1 267 KERINWTSDLHFKFTTAISAL-GDQKARPKAIMDMMGLENLTMRQVASHLQKYK 319
                                68*******************.9******************************7 PP
2Myb_DNA-binding34.74e-11271319348
                                SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                +WT +++ ++  a+  lG    ++k+I+ +mg +++t  q+ s++qky+
  Rmu_sc0000459.1_g000011.1 271 NWTSDLHFKFTTAISALGDQkaRPKAIMDMMGlENLTMRQVASHLQKYK 319
                                8*****************99****************************7 PP
3Response_reg45.15.5e-16211281109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                +l+ d + + ++  +++le+  + +v++ ++++ al ++ e++  ++l++  i+m++++ + +l  + e++  +p+i+++++ +
  Rmu_sc0000459.1_g000011.1  21 ILLFDHDTFSLMYTASVLEQYSF-NVTAIEQASVALSMISEQKdhYELVMASINMSDIESVSFLHALLEKD--IPVILISSEMN 101
                                789999999**************.***************655556**********************9977..*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                 +++ +al+ Ga+ +l+Kp++ e+l +
  Rmu_sc0000459.1_g000011.1 102 ADMTRKALDKGASIILEKPIPLEDLKN 128
                                ************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    
MDNISFIETD GIPEFAHGLK ILLFDHDTFS LMYTASVLEQ YSFNVTAIEQ ASVALSMISE  60
QKDHYELVMA SINMSDIESV SFLHALLEKD IPVILISSEM NADMTRKALD KGASIILEKP  120
IPLEDLKNVW RHVYRKTNPM EDIGKPNCEE KIDWPKDYQE SSVLRPSFAG IETKEDGALC  180
RPDTGHYWNG TGLETDLEGL DSYSIEELFP TKSRKQKASG MKPADDTEEQ GKQKKLKLTV  240
EQTDSDSIAR NQKGISKKHS NDKTDKKERI NWTSDLHFKF TTAISALGDQ KARPKAIMDM  300
MGLENLTMRQ VASHLQKYKN QVRRINETGI FTGRSSLSKV SGGNEFVPAK QSSLVYQKKP  360
GTSRFGVGGK PTESTTPNSL TRPSISVASL DNHDYRMQNL NSSHGGLSRY GNTNSPNDSL  420
RTDGWFQNMN QIPETSSFVC KTGMKEILKK KLKVTENLPG MTYMASEVDP PNMSTNTFQL  480
PDEPPAVHQK QNCTPALTDP FNSINKETPI AGTTEVLELQ KMNLPSMNYS TPEVDSPHMS  540
AHAFQFSNEV SVANQEQNCT LIVSAPMNSE IRDEFSTEDQ RSELFEPMPM NLPSMTPDSA  600
SVIQEQYYAP VNSSSSETRN SFSTEVAGTN ELFELVLKDS PSMEYMTKED ASLQKSENAS  660
QLPNEPLGMD LQQYRTPHEN KFSARTTELE FLAKETPSRN ANNLGNLPAN FNDGSQKLDT  720
LAGEAPPAIL SNDHQHYTPV FTVPFAFQNQ NKVSLVATEL QLLEEQTASS NAKNLQNLPT  780
KFNSGSQKLD AITGEAPPAI SLNEHQHYTP SFTIPFDSQN QNKVSPVTTE LGEQKASSNA  840
KDIENLPVYF NSGSQELNNL TGDSPPAISS NEHQPLSEYA DLLKMLEADP EYNSFGNAPY  900
AGNFDEYREW LERSLFGDST EQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.11e-40ARR-B family protein