PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000441.1_g000133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28811.4 Da PI: 7.5944 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.9 | 1.1e-27 | 23 | 72 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien s rqvtfskRr g++KKA ELSvLCdae+aviifs+tgklye s Rmu_sc0000441.1_g000133.1 23 KKIENLSSRQVTFSKRRSGLFKKAAELSVLCDAEIAVIIFSQTGKLYEQS 72 68*********************************************965 PP | |||||||
2 | K-box | 29.9 | 2.3e-11 | 107 | 194 | 13 | 100 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +++ lq++++ ++++ie Lq e+ +++G++L+sLsl++L +Le+q ++ +++kK+e+l e+ +++ k +++ ++ ++L++ Rmu_sc0000441.1_g000133.1 107 DSSALQRKFEAMQQKIEALQLELCRMKGQKLDSLSLNDLYELEKQQMEGELAVKNKKEEILSEEKQKTTKEHEKAMQKIENLER 190 5678999*********************************************************99999998888889999999 PP K-box 97 klee 100 ++ee Rmu_sc0000441.1_g000133.1 191 EIEE 194 9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MVGNDTGRNS QTRKMGRGKI EIKKIENLSS RQVTFSKRRS GLFKKAAELS VLCDAEIAVI 60 IFSQTGKLYE QSSTRYHNFS NKQGLLQLEY SSEERPHESA EEEQRFDSSA LQRKFEAMQQ 120 KIEALQLELC RMKGQKLDSL SLNDLYELEK QQMEGELAVK NKKEEILSEE KQKTTKEHEK 180 AMQKIENLER EIEELRRQNY VRPSIIESHP PKKRLLYFTN SSKAVSNCST ASEHESDEHS 240 DTSLQLGYV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 2e-36 | MIKC_MADS family protein |