PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000429.1_g000028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 291aa MW: 33233.6 Da PI: 5.7095 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 1e-19 | 60 | 112 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++++q+++Le Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Rmu_sc0000429.1_g000028.1 60 KRRLSSHQVKALEMSFEVENKLEPERKVKLAAELGLEPRQVAIWFQNRRARWK 112 5589************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.3 | 7.8e-42 | 59 | 150 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 kkrrls++qvk+LE+sFe e+kLeperKv+la eLgl+prqva+WFqnrRAR+ktkqlE+dy++Lk+ yd+lk++ + L+++++ Rmu_sc0000429.1_g000028.1 59 KKRRLSSHQVKALEMSFEVENKLEPERKVKLAAELGLEPRQVAIWFQNRRARWKTKQLERDYSVLKADYDSLKHNYDGLDRQNK 142 9*********************************************************************************** PP HD-ZIP_I/II 86 eLreelke 93 +L+++lk+ Rmu_sc0000429.1_g000028.1 143 ALADQLKD 150 *****986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence |
MKRFSRSDSL DSLGTLIPNY PPKEEEKHNK KNNGGYSKEF QTMLDSYDQE DCGEEILVKK 60 RRLSSHQVKA LEMSFEVENK LEPERKVKLA AELGLEPRQV AIWFQNRRAR WKTKQLERDY 120 SVLKADYDSL KHNYDGLDRQ NKALADQLKD LKAKLCRDNA ESGQSVKEES PISVYKSSVV 180 EQSRDQDLSD NGDNAGLDLY KNLKSKDGSS DSDSNGAMKE ESNGNESSLG YNGHSLSSNS 240 MMNWFQLSDS RSGNKGYHHQ TQFGRMEEQS LFSTEESCNF FSVDQAPSLH W |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 88 | KKRRLSSHQVKALEMSFEVENKLEPERKVK |
2 | 107 | 115 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-46 | HD-ZIP family protein |