PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000424.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37309.1 Da    PI: 4.4784
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000424.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1887140356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k++++t +q++ Le+ Fe ++++  +++ eLAk+l+L+ rqV +WFqNrRa+ k
  Rmu_sc0000424.1_g000003.1  87 KKRRLTVDQVQFLEKNFELENKLEPDRKVELAKELSLEPRQVAIWFQNRRARFK 140
                                56689***********************************************98 PP
2HD-ZIP_I/II125.81.9e-4087178293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kkrrl+ +qv++LE++Fe e+kLep+rKvela+eL l+prqva+WFqnrRAR+ktkqlEkdy++L+++yd+lk+++++L k++ 
  Rmu_sc0000424.1_g000003.1  87 KKRRLTVDQVQFLEKNFELENKLEPDRKVELAKELSLEPRQVAIWFQNRRARFKTKQLEKDYDSLRASYDKLKADHDKLLKQNG 170
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelke 93 
                                +L++e+++
  Rmu_sc0000424.1_g000003.1 171 NLKNEIDS 178
                                ***99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MVGGKRYGAS SDMNAVFQHE RPPCSSDVLE SLWIPTSSSS FHGSNSMVNF ENVSGGDSMD  60
KSLFQSIDKE ENGDDDYEGS LLHQPGKKRR LTVDQVQFLE KNFELENKLE PDRKVELAKE  120
LSLEPRQVAI WFQNRRARFK TKQLEKDYDS LRASYDKLKA DHDKLLKQNG NLKNEIDSLK  180
DELLLREKGK ENLESNDDGI NSPKMDIQNT IPNNTADVYV PIMVCKQEDA SSAKSDVFDS  240
DSPHCTENHS LLLEPTTTAD SSHGFEPADH SDFSQDNEDD NSLTRSLLHL PPPYYLKLED  300
ICYDDPPAIS SNFGLIPVED QHPFGFWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARFKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-29HD-ZIP family protein