PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000407.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 821aa    MW: 91801.7 Da    PI: 9.0806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000407.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.5e-123904541686
                                EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                + lp++f++ + +++++s +ltlede+g++++v +     ++ry l++GW +F+++++L +gD vv++ ++
  Rmu_sc0000407.1_g000004.1 390 MNLPRRFCDGN-LPETKS-QLTLEDEEGNEFTVVF----IPERYGLSGGWVSFAREKKLHDGDAVVLEQIE 454
                                67******777.455555.8***************....566788**********************9443 PP
2B339.79e-134585281593
                                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                +  lp++f++ + +++++s +ltlede+g++++v +     ++ry l++GW +F+++++L +gD vv++ +  ++++l+
  Rmu_sc0000407.1_g000004.1 458 LKNLPRRFCDGN-LPETKS-QLTLEDEEGNEFTVVF----IPERYGLSGGWVSFAREKKLHDGDAVVLEQI--EKTRLK 528
                                5579*****777.455555.8***************....566788***********************43..455444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    
MKVKAKLVTS YCHNFMASLA TLMKPWCRDG GLHTGDMCAS SLCKPICEEW GMKKRRRGVL  60
ALGYHYMIVI LAGIPIGPET DQFGTVRRQS VSTVADGDEE LFFALLLELD LTTRRTPPPR  120
RLCQPIPMAH HESQQLNPRQ NRHGNCRHDL VPARFHQFSM LFIHTGADPF AEVSPLKPRG  180
VLYDGPQLSK PEISLRKEEN PQNKNGAEER KRVIKTVCSI HAPRPRLRFT WDSSIKKAPK  240
KKSRTPSAPK SRSSSPVSGR KLKHAEEPII ASAEVRNAAL ESDHAEEPII ASAEVGNAAL  300
ESDVEKSSNK EPTAPEVKTT SPLPPKTKSA APSTPKINST PPMSGRKRGN AIVREEPRDA  360
SIEARSIARE AARAHQMSLA SGTPSVVISM NLPRRFCDGN LPETKSQLTL EDEEGNEFTV  420
VFIPERYGLS GGWVSFAREK KLHDGDAVVL EQIEKTRLKN LPRRFCDGNL PETKSQLTLE  480
DEEGNEFTVV FIPERYGLSG GWVSFAREKK LHDGDAVVLE QIEKTRLKVL QNLNSPMALP  540
QLIPSPSSSS SSLHHKPSFN PNPLPYPLSP NPNFFSPRLR RQRRRSSSLT CSASSFSERH  600
HTNSKSDDVV ELPLFPLPLV LFPGAILPLQ IFEFRYRMMM HSLLQTDLRF GVIYSDAVSG  660
TADVGCVGEV VKHERLVDDR FFLICKGQER FRVTDLVRTK PYLVAEVKWL EDRPSGDGEE  720
DLDTLATEVE SYMKDVIRLS NRLGGKPEKE VQDLRRNLFP TPFSFFVGST FEGAPREQQA  780
LLELEDTAAR LKREKETLRN TLNYLTAASA VKDVFPSSSS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1580585RRQRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-14B3 family protein