PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000401.1_g000028.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 435aa MW: 47074 Da PI: 7.3985

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000401.1_g000028.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.4	2.1e-12	183	207	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG+CkyG++CkF+H++ Rmu_sc0000401.1_g000028.1 183 EPACAFYLKTGQCKYGATCKFNHPK 207 689********************96 PP
2	zf-CCCH	37.9	2.9e-12	391	414	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++C+F H+p Rmu_sc0000401.1_g000028.1 391 VICVYYLKTGTCKYGATCSFDHPP 414 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MASHLFTYGA AESAPALTPA LSTVYTPRSL AQSYLSDPTH RYLSGSDPLS NSSMYLARVT 60 SYMMSSWPAP DAEPGPPGFK RTSEAKRPRF ENTSLPIYPQ RPGEKDCVHY MQTRTSKFGE 120 GCKFDHPIWV PDGGIQDWKE VPLVAPSESL PERPGTPDCP DKLATVGASE NGDVYALPER 180 PSEPACAFYL KTGQCKYGAT CKFNHPKDIQ IPSATQENKS GETETDLKTE GSEVAVKPLV 240 SFTPALLYNS KELPVRPGEA DCPFYLKTGS CKWPHTCRYN HPVTYDINPP VAAISYPLSA 300 PSVAGFNIGV ANPAAFTYQT LAQPTVGASP TVYPQRFGQA ECETGECKYG AQRRFHHPID 360 RPAVALSTTK PSQQENVKLT LAGLPRREGA VICVYYLKTG TCKYGATCSF DHPPPGEVVA 420 MAASQAKSDS TGGKA

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MASHLFTYGA AESAPALTPA LSTVYTPRSL AQSYLSDPTH RYLSGSDPLS NSSMYLARVT  60
SYMMSSWPAP DAEPGPPGFK RTSEAKRPRF ENTSLPIYPQ RPGEKDCVHY MQTRTSKFGE  120
GCKFDHPIWV PDGGIQDWKE VPLVAPSESL PERPGTPDCP DKLATVGASE NGDVYALPER  180
PSEPACAFYL KTGQCKYGAT CKFNHPKDIQ IPSATQENKS GETETDLKTE GSEVAVKPLV  240
SFTPALLYNS KELPVRPGEA DCPFYLKTGS CKWPHTCRYN HPVTYDINPP VAAISYPLSA  300
PSVAGFNIGV ANPAAFTYQT LAQPTVGASP TVYPQRFGQA ECETGECKYG AQRRFHHPID  360
RPAVALSTTK PSQQENVKLT LAGLPRREGA VICVYYLKTG TCKYGATCSF DHPPPGEVVA  420
MAASQAKSDS TGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-144	C3H family protein