PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000272.1_g000025.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 278aa    MW: 30828.2 Da    PI: 4.9709
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000272.1_g000025.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.34.8e-123199357
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC............TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl............gLterqVkvWFqNrRakekk 57
                               +R+t+t +q+++L+el++    + p+ae++++   +l            +++ ++V++WF N+Ra+ek+
  Rmu_sc0000272.1_g000025.1 31 TRWTPTIDQIRILKELYYDkgVKSPTAEHIQRTCLQLnqygclqlkwygKIEFKNVYFWFVNQRAREKQ 99
                               7****************96579*********************************************97 PP
2Wus_type_Homeobox68.41.3e-2230101365
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLee........yGkiedkNVfyWFQNrkaRerqkq 65 
                                 tRWtPt +Qi+iL+ely+ +G+++P++e+iqr   +L++        yGkie kNV++WF N++aRe+qk+
  Rmu_sc0000272.1_g000025.1  30 GTRWTPTIDQIRILKELYYdKGVKSPTAEHIQRTCLQLNQygclqlkwYGKIEFKNVYFWFVNQRAREKQKK 101
                                69***************9889************998887722222222579*******************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MEPQTQQPTE DGGSNKAVES SANMLRRRSG TRWTPTIDQI RILKELYYDK GVKSPTAEHI  60
QRTCLQLNQY GCLQLKWYGK IEFKNVYFWF VNQRAREKQK KRLTSDVHVP MQRSGLAGGS  120
IDLNFGSTSS TGVGGSIDLN VDPYSSLSFT TSTSTTFLEM NEEQTVMEQQ GEDHQEIETL  180
PLFPMHGEDI FGNMKTTSEG GSGYGYYSGG WGGYNGGSRI SLELSLDCSG AADGYGYYSD  240
GWGAYNGGSR ISLSSVSTAP ELLTWLSVVY LFIIFFSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-22WOX family protein