PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000235.1_g000074.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 686aa    MW: 77887 Da    PI: 5.1104
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000235.1_g000074.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.44.9e-1133126832374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL++cA+av+s d ++a++ L+ +++++sp+gd +qRla+y++++L++rl+  vs+  +++ + +  + + +  l+a++++ 
  Rmu_sc0000235.1_g000074.1 312 QTLLTQCAQAVASYDIRNANEQLKLIRQHSSPYGDGTQRLAHYLANGLEERLTAAVSSYKQSV-CFSRGNLSAAVILKAYRTYI 394
                                689***************************************************666655555.444545779999******** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                 ++P+ k+s++ aNq+I + +e+++r+HiiDf+i +G QWp+L+qaL++Rp+gpp++RiTg++ p+sg   +e leetg+rL++
  Rmu_sc0000235.1_g000074.1 395 TACPFKKMSNFYANQTIRKLAEEKTRLHIIDFGILYGYQWPCLIQALSKRPGGPPMVRITGIEFPQSGfrPSEGLEETGRRLQN 478
                                *******************************************************************9**************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                ++++++vpfe+++ +ak++e++++e+++v+++E+++Vn+ ++l++l+ ++v l+s+rd+vLkl+++++P+v+++   +  +n++
  Rmu_sc0000235.1_g000074.1 479 YCKRVNVPFEYTA-IAKNWETIQYEDIKVERDEVTVVNCLYRLKNLP-DDVVLDSPRDTVLKLIRRINPDVFIHGIVNGTYNAP 560
                                *************.7*******************************9.88999999**************************** PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F +rf e+l+++s+lfd++e++lpre+ +r   E+e++gr++ nvvaceg++r er et+++W++r  +aGFk++pl+++  k
  Rmu_sc0000235.1_g000074.1 561 FFDTRFRETLYHFSSLFDMYEETLPREDPDRLLFEQEVFGRDLINVVACEGSMRLERPETYKQWQMRNIRAGFKQLPLDQDLLK 644
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +k++++  + + + v+e+ ++++ gWk+r + ++S+W+
  Rmu_sc0000235.1_g000074.1 645 RIKTMVKSEYHKDFVVDEDGKWVLHGWKGRIIHAISCWK 683
                                ********99888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MDTLLEEFPN SMNKFTFDQN SVPSFPDQNP ADQFEANHEF TNPSFSPANS YPYTDFSSSS  60
SGLSSEGVYS PDTGDSNTIL RFISEMLMEE EDLENKPCML QDCLALRAAE KSLYDVLVQE  120
DPSSTSQNLT STYQNVGSPD DGSNHSSSSS IAGSNWVDSD FNYIQEVLDT VVPNPFVSNG  180
KGGVTDLEGN SSFSADARRL SDDVKFSPDK DESDESRNGS RGKKNRYRED GDYLDEERSY  240
KQSAVYADEI EPEEMFDQVL LCQGHKSSSS PQVSELKDGN GKLQRNGKPK GSKAKKTGKK  300
KAGDNKEVVD LQTLLTQCAQ AVASYDIRNA NEQLKLIRQH SSPYGDGTQR LAHYLANGLE  360
ERLTAAVSSY KQSVCFSRGN LSAAVILKAY RTYITACPFK KMSNFYANQT IRKLAEEKTR  420
LHIIDFGILY GYQWPCLIQA LSKRPGGPPM VRITGIEFPQ SGFRPSEGLE ETGRRLQNYC  480
KRVNVPFEYT AIAKNWETIQ YEDIKVERDE VTVVNCLYRL KNLPDDVVLD SPRDTVLKLI  540
RRINPDVFIH GIVNGTYNAP FFDTRFRETL YHFSSLFDMY EETLPREDPD RLLFEQEVFG  600
RDLINVVACE GSMRLERPET YKQWQMRNIR AGFKQLPLDQ DLLKRIKTMV KSEYHKDFVV  660
DEDGKWVLHG WKGRIIHAIS CWKSAW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-173GRAS family protein