PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000235.1_g000060.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 659aa    MW: 75482.5 Da    PI: 6.9091
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000235.1_g000060.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.83.3e-1162876573374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lL +cA+a++s d++++++lL+++++++sp+gd++qRl +yf+ +L+arla++++  y+ ++  +ts    ++ l a++l++ 
  Rmu_sc0000235.1_g000060.1 287 TLLNQCAQAMASYDQRAVNELLKQIRQHSSPHGDATQRLSHYFADGLEARLAGTMTPSYSPVANMQTS---AADILRAHRLYVT 367
                                689**************************************************999999888888887...9************ PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                +sP+ k+s+++aN +I+e ++ ++r+HiiDf+is+G+QWp+L+q +++Rp+gpp+++iT+++ p++g   +e++eetg+rLa++
  Rmu_sc0000235.1_g000060.1 368 ASPLKKMSNFVANTTIMELAKDATRLHIIDFGISYGFQWPCLIQHISERPGGPPQIQITAIELPQPGfrPTERVEETGRRLARY 451
                                ******************************************************************9***************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                                +++++vpfe+nv +a+++e++++e+L+++++E ++Vn++++l +++de+v ++s+rd+vLkl+k+++P+++v+   +  ++ + 
  Rmu_sc0000235.1_g000060.1 452 CAKFNVPFEYNV-IAQKWESIRVEDLNIDRNELIVVNCMHRLRHIPDETVMVSSPRDRVLKLIKKINPDLFVHGIINGTYSPPF 534
                                ***********9.7********************************************************************** PP

                       GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                F++rf eal ++ alfd++ea +pre+++r++ Ere+ gr+i nvvaceg er+er et+++W+ r  + GFk+vpl+++  ++
  Rmu_sc0000235.1_g000060.1 535 FVTRFKEALFHFGALFDMFEAIVPREDQWRQMFEREIYGRDIINVVACEGLERVERPETYKQWNLRTLRTGFKQVPLEQDCLMK 618
                                ************************************************************************************ PP

                       GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +k++l+ ++  + +r++e+ +++++gWk+r ++++S+W+
  Rmu_sc0000235.1_g000060.1 619 VKSMLKLTSyHKDFRIDEDGEWMLQGWKGRIVMALSFWK 657
                                *******999999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    
MDTLLKRFYG SASVSSNQNL ANRFQVNHES TNPLFPTNFN HPYRPCTPSE EDTCDNNDCN  60
NPMLKYISDT LLEEDLEGKP CMLQNCLALQ AAEKSFYDLL NPKYRPSFDQ PPLSVYQSFE  120
NSDDDSTQSC HSSIGSITPV TPKTNPFHVE SSFAETISDT ILVSHSLSQM ERLGFLGVRE  180
AIKNVVYEPE NDSYSSTNGP KGKKHQQRED GNNPYNGRSN KQSAASAQDF EPQEMFGKVF  240
LCQGENHESE CCSPREFIKS EESGRLWLKR QPRGSKKHNN KVVDVCTLLN QCAQAMASYD  300
QRAVNELLKQ IRQHSSPHGD ATQRLSHYFA DGLEARLAGT MTPSYSPVAN MQTSAADILR  360
AHRLYVTASP LKKMSNFVAN TTIMELAKDA TRLHIIDFGI SYGFQWPCLI QHISERPGGP  420
PQIQITAIEL PQPGFRPTER VEETGRRLAR YCAKFNVPFE YNVIAQKWES IRVEDLNIDR  480
NELIVVNCMH RLRHIPDETV MVSSPRDRVL KLIKKINPDL FVHGIINGTY SPPFFVTRFK  540
EALFHFGALF DMFEAIVPRE DQWRQMFERE IYGRDIINVV ACEGLERVER PETYKQWNLR  600
TLRTGFKQVP LEQDCLMKVK SMLKLTSYHK DFRIDEDGEW MLQGWKGRIV MALSFWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-172GRAS family protein