PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000235.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GRAS | ||||||||
Protein Properties | Length: 207aa MW: 23632.5 Da PI: 10.3076 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 75.6 | 9.3e-24 | 103 | 204 | 273 | 373 |
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355 ++pre++ r++ Ere+ ++i+nv+aceg er+er t++kW+ r + G+k+ pl+++ k++k l + ++ + +rv+e++ Rmu_sc0000235.1_g000004.1 103 PTIPREDKRRMMFEREIYDNDIMNVIACEGLERFERPDTYKKWQIRNVRTGLKQHPLDQERLKKVKNLSKLMGyHKDFRVKEDR 186 689*******************************************************************9999999******* PP GRAS 356 gslvlgWkdrpLvsvSaW 373 +++++gWk+r +v++S+W Rmu_sc0000235.1_g000004.1 187 HWMLQGWKGRIIVALSFW 204 ****************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MLTDALSPKS YERSYSVVLD LEDACGGGIW HRGGRRLLVL LGKKAAGAAG SCGCPRGTAG 60 AADCYVSYRG SGCTVGEAEV RLVRARCKQS SRWRVLVVVV RAPTIPREDK RRMMFEREIY 120 DNDIMNVIAC EGLERFERPD TYKKWQIRNV RTGLKQHPLD QERLKKVKNL SKLMGYHKDF 180 RVKEDRHWML QGWKGRIIVA LSFWISA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 5e-33 | GRAS family protein |