PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000184.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 557aa    MW: 63295.5 Da    PI: 6.1288
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000184.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.61.7e-2853137187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++qe+laL+++r++m+ +++++++k+plWeevs+km e g++r +k+Ckek+en+ k++k+++e++ +r++++  t++yf+q
  Rmu_sc0000184.1_g000013.1  53 RWPRQETLALLKIRSDMDAEFKAASAKMPLWEEVSRKMGEAGYSRDAKKCKEKFENIYKYHKRTRETRCGRSAGK--TYKYFEQ 134
                                8********************************************************************986555..6****** PP

                   trihelix  85 lea 87 
                                lea
  Rmu_sc0000184.1_g000013.1 135 LEA 137
                                *85 PP
2trihelix94.21.2e-29380464186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+++ev +Li++r++ + +++++ +k++lWee+s+ m++ g+ r++k+Ckekwen+nk+y+++k+++kkr +e+s+tc+y++ 
  Rmu_sc0000184.1_g000013.1 380 RWPREEVEDLIKLRSNYDLQYQENGSKGHLWEEISASMKKLGYDRNAKRCKEKWENINKYYRRLKDSNKKR-PEDSKTCAYYNV 462
                                8*********************************************************************8.99*********9 PP

                   trihelix  85 le 86 
                                l+
  Rmu_sc0000184.1_g000013.1 463 LD 464
                                97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    
MLDNSTLPAN PSSPASDRRA EEVAGDGGSV SVGLEEEERA GLEQGYRNWA GNRWPRQETL  60
ALLKIRSDMD AEFKAASAKM PLWEEVSRKM GEAGYSRDAK KCKEKFENIY KYHKRTRETR  120
CGRSAGKTYK YFEQLEAIEQ HHFEHPPPAE TVQAETAATI PKDGVPNAIP PCSSIQHQLS  180
SFVDNSTPTT SCSSKESEGT HKKKRRVTEF FEKLMKQVID KQENLQTKFV EVMDKYEQDR  240
VAREEAWKMQ EMARIERERE QLAQERSVAA AKDSAVLAFL QKFSEQAASV HMPPGQACSV  300
QIPNQLPMQA CSVQLPNQSS SVQLPAQASA VRVQMPDNSP LANTVTDKQK KDEDWERLQR  360
SLERPDKNNG RSRTPIGSTR WPREEVEDLI KLRSNYDLQY QENGSKGHLW EEISASMKKL  420
GYDRNAKRCK EKWENINKYY RRLKDSNKKR PEDSKTCAYY NVLDALYNKK TSRAENQVDS  480
NYELRPEELL MHMMSGQEEQ PQPESVTQNG DSDNVEKIQE DNGNGVGVED VAGDGYRIVA  540
ANPSPMEQDN PSVAIMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206KKKRR
2202207KKKRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-121Trihelix family protein