PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000168.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 25709.9 Da PI: 5.8925 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 8 | 33 | 21 | 48 |
TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48 + W+tIa+ ++ +Rt++++k++w+++l Rmu_sc0000168.1_g000002.1 8 CR-WSTIAAQLP-KRTDNEIKNYWNTHL 33 45.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MEIGMYKCRW STIAAQLPKR TDNEIKNYWN THLKKRLAKI GFDPVTHKPK TAILASADGG 60 DPKNLSNLSH IAQWETARLQ AEARFSGQSK LLISHDQPPR FGPVPVPQCL DMNERAREIR 120 LLLKSILAAD SGIQLGGGIG TTAAHVGQEV GSFGKVDVEG LLTNCDQFEA PRTSTSVLGF 180 DEVFGESGTS NDYSELLEAL LQHNHNNTGF EVGDAWSLEQ RETVMMSEPG TTYI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 3e-33 | MYB family protein |