PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000159.1_g000052.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 273aa    MW: 31045.9 Da    PI: 9.9184
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000159.1_g000052.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-2086147157
                                TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                r++R+t+t+eq+  Leel+++  ++p+a+++++ A++l    +++ ++V++WFqNrRa+e++
  Rmu_sc0000159.1_g000052.1  86 RSSRWTPTPEQIMHLEELYRSgIKTPTAQQIRHVAARLrnygRVEGKNVFYWFQNRRARERQ 147
                                689*****************99**************************************97 PP
2Wus_type_Homeobox108.53.9e-3587148364
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                ++RWtPtpeQi+ Leely+sG++tP++++i++++a+L++yG++e+kNVfyWFQNr+aRerqk
  Rmu_sc0000159.1_g000052.1  87 SSRWTPTPEQIMHLEELYRSGIKTPTAQQIRHVAARLRNYGRVEGKNVFYWFQNRRARERQK 148
                                79***********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MMGSSGGCRD PNNRARPEYF SIKAACPQPA VLLTPKLSCT SNMTQSPLLP FNHHHQMVPV  60
TSNEQGRHSS DCFYSDKQPA AAAPPRSSRW TPTPEQIMHL EELYRSGIKT PTAQQIRHVA  120
ARLRNYGRVE GKNVFYWFQN RRARERQKTR RELMSMHQSD SKQQQQQQTL TKNTISSLRD  180
KESAGADFLR CFEVEQQNSR TLPSFTLLTD QQLASNKKSP RSSGLADSLA PGDIGGRMDE  240
IQIQEYTLFG LGEVQRWSEI PPWGNFKYTP QTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.12e-25WOX family protein