PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000145.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 1076aa MW: 118590 Da PI: 8.3364

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000145.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.8e-40	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Rmu_sc0000145.1_g000013.1 154 MCQVDDCKEDLSSAKDYHRRHKVCESHSKSTKALVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 231 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence
MEEVGAQVAA PIFLRQSLSS RFCDAPAAAA AAMGKKKRDL PYQTPNYQHP NSQPRFANPG 60 TNSWNPSVWG WDSMRFVAKP LDTEMMGTTN SEPKRKEEAA AGVVKSTAVV GDDDERLQLN 120 LGGGLATVEE PAASRPNKRV RSGSPGNNGG SYPMCQVDDC KEDLSSAKDY HRRHKVCESH 180 SKSTKALVAK QMQRFCQQCS RFHPLSEFDE GKRSCRRRLA GHNRRRRKTQ PEDVTSRLTI 240 PGDGDNKTSG NLDIVNLLAA ITRPQGKNDV RTTNGSSVLD REQLLQILSK INSLPLPVDL 300 AAKLPNLGNL NWKASDLLSL DLQNKLNGKT SASTMDLITV LSATLAAPSS DTLAMLSQKS 360 SQSSDSEKTK LTCSDQAAGP NLQKRPPQEF HSAGGERSST SYQSPTEDSD CQVQETRVKL 420 PLQLFSSSPE DDSPPKLASS RKYFSSDSSN RTEERSPSSS PPVMQTLFPM KSMADTVKSE 480 KLSISKDLNV NLDSSMNGGS NLPFDLFRGP NRGAVSSSIQ NFPHQAGYTS SSSDHSPSSL 540 NSDPQDRTGR ILFKLFDKDP SQLPGTLRTQ VYSWLSNSPS EMESYIRPGC VVLSVYVSMS 600 FAAWEHLEEN LVQRVSSLIQ SSDSDFWRSG RFLVNTGRQL ASHKDGKIRL SKAWTTFSSP 660 ELISVSPLAV VAGQKTSLSI RGRNLTNLGT KIHCTYMGGY TSKEVGTTYH GTAYDEINLG 720 SFQIHDASPG VLGRCFIEVE NGFKGNSFPV IIADATICSE LNLIESEFDG ETKVCSAISE 780 DENHDYGRPR SREEVLHFLN ELGWLFQRKR ISSMFQGSGY SLSRFKFLLT FTVERDCCTL 840 VKTLLDILVN FDGNELSRES LGMLSDVQLL NRAVKRRCRK MIDLLINYSV ISSDKRYIFP 900 PNLAGPGGLT PLHLAASLSN SEDMIDALTN DPEEIGLNCW HSLLDGNGQS PYAYAMMRNN 960 YSYNNLVARK LTDRRNSQVT LTIGNEIEQT HMAMELERRT SIQFRQGSRS CAKCAVAATK 1020 YTRRVPGAQG LLQRPFIHSM LAIAAVCVCV CLFLRGSPDI GSVAPFKWEN LDFGTI

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence

MEEVGAQVAA PIFLRQSLSS RFCDAPAAAA AAMGKKKRDL PYQTPNYQHP NSQPRFANPG  60
TNSWNPSVWG WDSMRFVAKP LDTEMMGTTN SEPKRKEEAA AGVVKSTAVV GDDDERLQLN  120
LGGGLATVEE PAASRPNKRV RSGSPGNNGG SYPMCQVDDC KEDLSSAKDY HRRHKVCESH  180
SKSTKALVAK QMQRFCQQCS RFHPLSEFDE GKRSCRRRLA GHNRRRRKTQ PEDVTSRLTI  240
PGDGDNKTSG NLDIVNLLAA ITRPQGKNDV RTTNGSSVLD REQLLQILSK INSLPLPVDL  300
AAKLPNLGNL NWKASDLLSL DLQNKLNGKT SASTMDLITV LSATLAAPSS DTLAMLSQKS  360
SQSSDSEKTK LTCSDQAAGP NLQKRPPQEF HSAGGERSST SYQSPTEDSD CQVQETRVKL  420
PLQLFSSSPE DDSPPKLASS RKYFSSDSSN RTEERSPSSS PPVMQTLFPM KSMADTVKSE  480
KLSISKDLNV NLDSSMNGGS NLPFDLFRGP NRGAVSSSIQ NFPHQAGYTS SSSDHSPSSL  540
NSDPQDRTGR ILFKLFDKDP SQLPGTLRTQ VYSWLSNSPS EMESYIRPGC VVLSVYVSMS  600
FAAWEHLEEN LVQRVSSLIQ SSDSDFWRSG RFLVNTGRQL ASHKDGKIRL SKAWTTFSSP  660
ELISVSPLAV VAGQKTSLSI RGRNLTNLGT KIHCTYMGGY TSKEVGTTYH GTAYDEINLG  720
SFQIHDASPG VLGRCFIEVE NGFKGNSFPV IIADATICSE LNLIESEFDG ETKVCSAISE  780
DENHDYGRPR SREEVLHFLN ELGWLFQRKR ISSMFQGSGY SLSRFKFLLT FTVERDCCTL  840
VKTLLDILVN FDGNELSRES LGMLSDVQLL NRAVKRRCRK MIDLLINYSV ISSDKRYIFP  900
PNLAGPGGLT PLHLAASLSN SEDMIDALTN DPEEIGLNCW HSLLDGNGQS PYAYAMMRNN  960
YSYNNLVARK LTDRRNSQVT LTIGNEIEQT HMAMELERRT SIQFRQGSRS CAKCAVAATK  1020
YTRRVPGAQG LLQRPFIHSM LAIAAVCVCV CLFLRGSPDI GSVAPFKWEN LDFGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	872	877	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein