PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000133.1_g000027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GATA | ||||||||
Protein Properties | Length: 181aa MW: 19803.7 Da PI: 12.0086 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56 | 5.5e-18 | 19 | 51 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C+ C++t TplWR+gp g+ktLCnaCG++ rk+ Rmu_sc0000133.1_g000027.1 19 CVDCKVTRTPLWRSGPAGPKTLCNACGIRLRKR 51 *******************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MINLRSKGSV AQESAERSCV DCKVTRTPLW RSGPAGPKTL CNACGIRLRK RLASLNPEDK 60 ANKGKRKKSR TERTRPTASV STNGSTTNTA AGKSTSTTAK SASPPPPPAA YGNARGSRGT 120 YLLRAVRIVA NKQRVVRKLR WCFQRRRRTN FRRTGFYFFD KNVEQAAVAA LLALSCGSSL 180 D |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 68 | RKRLASLNPEDKANKGKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16870.1 | 9e-15 | GATA family protein |