PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000110.1_g000047.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 216aa    MW: 25123 Da    PI: 6.2652
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000110.1_g000047.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-192677556
                               SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               ++f++eq++ Le+ Fe ++++  +++ + A++lgL+ rqV +WFqNrRa++k
  Rmu_sc0000110.1_g000047.1 26 RRFSDEQIKLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 77
                               47*************************************************9 PP
2HD-ZIP_I/II121.15.7e-3925115393
                HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                                 rr+s+eq+klLE+ Fe+++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L+++yd l+++ e+L++e+++
  Rmu_sc0000110.1_g000047.1  25 SRRFSDEQIKLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRNEYDLLASKFESLKEEKQS 108
                                69********************************************************************************** PP

                HD-ZIP_I/II  87 Lreelke 93 
                                L  +l++
  Rmu_sc0000110.1_g000047.1 109 LLIQLEK 115
                                *998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MEREVESLET HSTAKRKKNN KSLNSRRFSD EQIKLLESIF EADSKLEPRR KVQVARELGL  60
QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRN EYDLLASKFE SLKEEKQSLL IQLEKLNDLM  120
GKSKVHEENM DGKDLEGSSN KDGDCETTEE KPSHLQSHKN FASDDVGNEG HEQLMNMCQV  180
GAIVSPEDWH RFDSGGLFDP PRSSSATSQW LNFWIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17280RRARWKSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-41HD-ZIP family protein