PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000106.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 422aa MW: 47963.5 Da PI: 5.4264

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000106.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	274	296	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Rmu_sc0000106.1_g000004.1 274 YRCETCKKVFKSYQALGGHRASH 296 9************9999998887 PP
2	zf-C2H2	11.7	0.0008	340	362	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H Rmu_sc0000106.1_g000004.1 340 HQCPVCFRVFSSGQALGGHKRSH 362 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MERHKCKLCM RSFSNGRALG GHMRSHMMNL PIHQNPEGGE EEEEEEEEEE APHDQMLIDE 60 IDSVSASSDD DDDEEEEQGE GEEEEEEDEE GLYYGLRENP KRSIRLVDHE FSFAVDAGSV 120 VLQDRESETE SSKNPTRRRS KRTRKSAMFD HHHHHDDHQQ HQHQLHNQYH QHDPKLNQHH 180 LEAFKKIKLK NKIDSCANNV EPEPVSSISD ATTEEDVAFC LMMLSRDKWK KQDKQQDDQD 240 EDAEVELYRS LDDSDESEEQ LIKFQRTKSS RGKYRCETCK KVFKSYQALG GHRASHKKIK 300 AAAAAAAAAA NPNPNRIVYE PQPDPKINHN AGSSSFAKTH QCPVCFRVFS SGQALGGHKR 360 SHVTGSAAIN NTHHHTPPVK SLAKLGDNMI DLNLPAPVDD DEMSQIEISA VSDAEFVNPI 420 RR

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MERHKCKLCM RSFSNGRALG GHMRSHMMNL PIHQNPEGGE EEEEEEEEEE APHDQMLIDE  60
IDSVSASSDD DDDEEEEQGE GEEEEEEDEE GLYYGLRENP KRSIRLVDHE FSFAVDAGSV  120
VLQDRESETE SSKNPTRRRS KRTRKSAMFD HHHHHDDHQQ HQHQLHNQYH QHDPKLNQHH  180
LEAFKKIKLK NKIDSCANNV EPEPVSSISD ATTEEDVAFC LMMLSRDKWK KQDKQQDDQD  240
EDAEVELYRS LDDSDESEEQ LIKFQRTKSS RGKYRCETCK KVFKSYQALG GHRASHKKIK  300
AAAAAAAAAA NPNPNRIVYE PQPDPKINHN AGSSSFAKTH QCPVCFRVFS SGQALGGHKR  360
SHVTGSAAIN NTHHHTPPVK SLAKLGDNMI DLNLPAPVDD DEMSQIEISA VSDAEFVNPI  420
RR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-40	C2H2 family protein