PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000064.1_g000030.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 415aa MW: 48112 Da PI: 4.6588

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000064.1_g000030.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.1	5.5e-43	14	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 ppG++F Ptd el+ +yLk+k+ +++l++ + i++ +iy+++P++L + + +e ewyfFs+rd++y++g+r+nr++k gyWk Rmu_sc0000064.1_g000030.1 14 PPGYQFVPTDAELIIYYLKRKILNQQLPV-NRIRDENIYHYHPQTLAeMYPRIREIEWYFFSSRDRRYPNGSRPNRSAKGGYWK 96 9**************************.77**********8344445667************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 at +d+ +++++ge++g k L fy+g++ +g+kt+W mheyr+ Rmu_sc0000064.1_g000030.1 97 ATKRDEIITAQGGEEIGFKMHLEFYEGTHAQGRKTNWKMHEYRI 140 ****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MSDGEIDDYF RSFPPGYQFV PTDAELIIYY LKRKILNQQL PVNRIRDENI YHYHPQTLAE 60 MYPRIREIEW YFFSSRDRRY PNGSRPNRSA KGGYWKATKR DEIITAQGGE EIGFKMHLEF 120 YEGTHAQGRK TNWKMHEYRI KEENEENDIG PPQNTNKGEG ISMRLDDWVL CKIYIKKNFK 180 VDTDSNSLKT SDNSDQVVLP VTNVTTSRDC QNKLAIQHEV QDQSLNASQF DHNGFSTLTN 240 YRDVESSSSN FWNQNYTDDY DTYLMQMSRD PLSSRFFSSP FPLQSSTDQI CTELEPVDDK 300 ISEVDPSSML PAHVRECDEN MSENKNQNYT DDYDTYLMQM SRDPSSSRLF SSPFPLQSST 360 DQICAGLEPV DDKISQVDPS SIVLPAHVRE YDNRACKAEP IQPAVRDEGD DHVSK

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MSDGEIDDYF RSFPPGYQFV PTDAELIIYY LKRKILNQQL PVNRIRDENI YHYHPQTLAE  60
MYPRIREIEW YFFSSRDRRY PNGSRPNRSA KGGYWKATKR DEIITAQGGE EIGFKMHLEF  120
YEGTHAQGRK TNWKMHEYRI KEENEENDIG PPQNTNKGEG ISMRLDDWVL CKIYIKKNFK  180
VDTDSNSLKT SDNSDQVVLP VTNVTTSRDC QNKLAIQHEV QDQSLNASQF DHNGFSTLTN  240
YRDVESSSSN FWNQNYTDDY DTYLMQMSRD PLSSRFFSSP FPLQSSTDQI CTELEPVDDK  300
ISEVDPSSML PAHVRECDEN MSENKNQNYT DDYDTYLMQM SRDPSSSRLF SSPFPLQSST  360
DQICAGLEPV DDKISQVDPS SIVLPAHVRE YDNRACKAEP IQPAVRDEGD DHVSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	2e-49	NAC family protein