PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000064.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 782aa MW: 85205.3 Da PI: 6.0903

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000064.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.6e-07	364	384	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Rmu_sc0000064.1_g000020.1 364 PCPDFRK-GACRRGDMCEYAHG 384 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence
MEEEQQQQKQ SSLSLLFSCN NTTGKIGFDH LDAAFRAKVY SDLGNHECLA GWNLFGLPAN 60 ERMCYGSERV KPCSSSAASP IVDEHFNTTM NHLTVETEDT FASLLELAAN NDIESFRRSI 120 QHNPSAIDEI GLWYCRQKGS KQMVNELRTP LMVAATYGSN DVIKLILSLS DADVNQTCGN 180 DRSTALHCAA SGGAENAVDT VRLLLAAGAD PNLIDANGHR PVDVIVVPPR LQNVRLALEE 240 LLMINGSVGE QILSVSTRAL SPPLSTSPDN GSPSALDFTC SPTKSKFYNI TVSSASEKKE 300 YPVDPSLPDI KNSIYSTDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY 360 SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCARRV CFFAHTAEEL 420 RPLYVSTGSA VPSPRSTTSG ASAMDFAAAM SLLPGSPSSL SAMSPSPFTP PMSPSGNGMS 480 HSSVAWPQPN VPALHLPGSN IQSSRLRSSL CARDMAADDF DLLPEFDMQQ QQLLNELSMS 540 NSLNRSGRLN TLTPSNLDDL FSAENLSPRY SDQALASAVF SPTHKSALLN QFQQQQSMLS 600 PIHTNFSPKN TVDHPLLQAP FGAPSSGRMS PRNVEPISPM GSRVSMLGQR EKQQFRSLSS 660 RELGSSSTSN IGSPANAWSK WGSSDGKPDW AVTSDELGKL RRSSSFELGN NGEEPDLSWV 720 QSLVKESPTE IKEKLTTPVS GVAATGSSND GLSANSQMES VDHAAMGAWI DQLHLDLVAQ 780 QN

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence

MEEEQQQQKQ SSLSLLFSCN NTTGKIGFDH LDAAFRAKVY SDLGNHECLA GWNLFGLPAN  60
ERMCYGSERV KPCSSSAASP IVDEHFNTTM NHLTVETEDT FASLLELAAN NDIESFRRSI  120
QHNPSAIDEI GLWYCRQKGS KQMVNELRTP LMVAATYGSN DVIKLILSLS DADVNQTCGN  180
DRSTALHCAA SGGAENAVDT VRLLLAAGAD PNLIDANGHR PVDVIVVPPR LQNVRLALEE  240
LLMINGSVGE QILSVSTRAL SPPLSTSPDN GSPSALDFTC SPTKSKFYNI TVSSASEKKE  300
YPVDPSLPDI KNSIYSTDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY  360
SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCARRV CFFAHTAEEL  420
RPLYVSTGSA VPSPRSTTSG ASAMDFAAAM SLLPGSPSSL SAMSPSPFTP PMSPSGNGMS  480
HSSVAWPQPN VPALHLPGSN IQSSRLRSSL CARDMAADDF DLLPEFDMQQ QQLLNELSMS  540
NSLNRSGRLN TLTPSNLDDL FSAENLSPRY SDQALASAVF SPTHKSALLN QFQQQQSMLS  600
PIHTNFSPKN TVDHPLLQAP FGAPSSGRMS PRNVEPISPM GSRVSMLGQR EKQQFRSLSS  660
RELGSSSTSN IGSPANAWSK WGSSDGKPDW AVTSDELGKL RRSSSFELGN NGEEPDLSWV  720
QSLVKESPTE IKEKLTTPVS GVAATGSSND GLSANSQMES VDHAAMGAWI DQLHLDLVAQ  780
QN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein