PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000051.1_g000019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 287aa MW: 32400.7 Da PI: 7.1862 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.9 | 9.2e-07 | 104 | 123 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp Cgk+F+r n++ H+ Rmu_sc0000051.1_g000019.1 104 FSCPVCGKTFNRYNNMQMHM 123 89*****************9 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 189 | 211 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Rmu_sc0000051.1_g000019.1 189 FGCRKCGKPFAVRGDWRTHEKNC 211 56*****************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence |
MHHQEDEDDS VFLTLGPPGQ PVHRHILYHQ QASSSSSTQP HHQNPNYSTN HEDGVTVALH 60 IGQPFTTSGP SSNNNNNNVH IGAPMEGQYW IPSPAQILVG PTQFSCPVCG KTFNRYNNMQ 120 MHMWGHGSQY RKGPESLRGT KPSSSILRLP CYCCAEGCRN NIDHPRSRPL KDFRTLQTHY 180 KRKHGTKPFG CRKCGKPFAV RGDWRTHEKN CGKLWFCICG SDFKHKRSLK DHVRSFGDGH 240 AQYAVELCAE AEENEEEDLE DEDDNDESRD TNGGGQHHGV GSVYFNY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-117 | C2H2 family protein |