PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000050.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 472aa MW: 52212.2 Da PI: 8.6531

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000050.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.6e-06	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Rmu_sc0000050.1_g000007.1 71 YVCEICNQGFQRDQNLQMHRRRH 93 9*********************9 PP
2	zf-C2H2	15.3	5.6e-05	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Rmu_sc0000050.1_g000007.1 149 WVCDKCSKGYAVQSDYKAHLKTC 171 58*******************98 PP
3	zf-C2H2	10.8	0.0015	179	197	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Rmu_sc0000050.1_g000007.1 179 DCGRVFSRVESFIEHQDTC 197 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MLANNNHTNT SASSVAPSSS SDHHHAFTPL ENGAAAATAT NKRKRRPAGT PDPDAEVVSL 60 SPKTLLESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KREIQDQVKK RVFVCPEPSC 120 LHHDPCHALG DLVGIKKHFR RKHSNHKQWV CDKCSKGYAV QSDYKAHLKT CGTRGHSCDC 180 GRVFSRVESF IEHQDTCSVR HVVRPELQAL QPAAACSSRT ASSTSPSSDG HFSINNNNNA 240 APRLPGLPVM PKPNDQPVVF ISSHEGHDGN PSTSNHQHQH QQPREQVLEL KLLPSSDTQT 300 SPRNEDENYA THLKLSIGGS SRDGDQKNDS PRSSSREMNT NIGFGGRASR EVARLKDFAS 360 EELKLAMAEK AYAEDARREA KRQIEMAELE FANAKRIRQQ AQAELQKAQL LKEQSTKKIS 420 SAIMQITCPS CKQHFHASNP SNAVGVGPSV DETTSLGMSY MSSATTEGEG EQ

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MLANNNHTNT SASSVAPSSS SDHHHAFTPL ENGAAAATAT NKRKRRPAGT PDPDAEVVSL  60
SPKTLLESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KREIQDQVKK RVFVCPEPSC  120
LHHDPCHALG DLVGIKKHFR RKHSNHKQWV CDKCSKGYAV QSDYKAHLKT CGTRGHSCDC  180
GRVFSRVESF IEHQDTCSVR HVVRPELQAL QPAAACSSRT ASSTSPSSDG HFSINNNNNA  240
APRLPGLPVM PKPNDQPVVF ISSHEGHDGN PSTSNHQHQH QQPREQVLEL KLLPSSDTQT  300
SPRNEDENYA THLKLSIGGS SRDGDQKNDS PRSSSREMNT NIGFGGRASR EVARLKDFAS  360
EELKLAMAEK AYAEDARREA KRQIEMAELE FANAKRIRQQ AQAELQKAQL LKEQSTKKIS  420
SAIMQITCPS CKQHFHASNP SNAVGVGPSV DETTSLGMSY MSSATTEGEG EQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-141	C2H2 family protein