PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000040.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 186aa    MW: 21278.2 Da    PI: 6.431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000040.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153153123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C++ F++   L  H++ H
  Rmu_sc0000040.1_g000014.1 31 YECTFCKRGFTNAQALGGHMNIH 53
                               99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MESWTVPLSP ETSSDEERER DDNSGSAKRS YECTFCKRGF TNAQALGGHM NIHRKDRAKA  60
KQLSNQYRSN EDCISMSSSQ FSAPVYTQPA SGYYPVLAHH EHHVQRNYHQ MYYQPSESSA  120
RFYGSLNDDS MSSQSSMSHH VNQELWGANL SLRFSPTGRM EDDDFRMGVR NHEEVDLELR  180
LGHGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-18C2H2 family protein