PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000040.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 227aa    MW: 25228.3 Da    PI: 7.9855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000040.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-055274123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C++ F++   L  H+++H
  Rmu_sc0000040.1_g000012.1 52 YTCSFCKREFKSAQALGGHMNVH 74
                               9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MQRNTGFCKS LVKDHITTMT RATDGDSNNK KMKNIEDDED YMNVYPWPPR SYTCSFCKRE  60
FKSAQALGGH MNVHRKDRAR LRSSPPTDFI GQYTHSTILN LNLKPNPNPN FASSPPPSSS  120
PFSSVSTRQL PPLTTSSSSV PSWISQPSHP PPTFPSPFDT FHSENMKWAV GGTLSTPLNL  180
KTLDLSTQMK INTESQEDGC MKLDLEIGAL GGNSKDDIDL ELRLGYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-24C2H2 family protein