PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000013.1_g000028.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 910aa MW: 99226.2 Da PI: 5.2558

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000013.1_g000028.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.8	3.4e-16	484	522	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Rmu_sc0000013.1_g000028.1 484 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 522 589**********************************96 PP
2	TCR	50.3	4.6e-16	570	608	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs C+Ce+CkN Rmu_sc0000013.1_g000028.1 570 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNA 608 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence
MASFCEVAVI KVEIAASTGL SLTSHYLAFL DPGQEKGQWV DRILAQSKKL PAWPKCEHGH 60 NASDDLSKPE FSPESGNKVC ASEDAAQVYN NSSEIQEDCV PAVPIGETSV EPPSEHSKFV 120 IELPRNLNYD CGSPDCNTSR CGIIKEDCDS ELAEFSASVA QYVQETSDKC SSDDEAQQQL 180 ICQIEQRKEG TGCDWDSLIS DAADILIFDS PNSTEAFKEL MNHSLDPMTR FSTSIVPHLS 240 QNNIGDEQLV QVIDTVGSGQ QLQIEDHSSQ NGAANDLNET EHMPNHLNEY MVDNPNVKED 300 NKAETSIQLT CKPVINLHRG LRRRCLDFEM TGARRKSFEN VSNFSSSMLS QSNENVTTND 360 KPASMKPGGE SSRCILPGIG LHLNALATTS KDYKIIKNEN LASGRELSFP NSNASIHSPT 420 AAQGSVYESF PSASSERDMD GAENGVQLLQ DASQTSALLA NEDFNQNSPK KKRRRAEHTG 480 EGEACKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCQDCFN KPIHEDTVLA TRKQIESRNP 540 LAFAPKVIRN SDSAAPEYGD ESSKTPASAR HKRGCNCKKS NCLKKYCECY QGGVGCSIGC 600 RCEGCKNAFG TKEGSIIGTE TELDEEETEA AEKSVADGDQ QKNEIQKNEE QTSALPTTPL 660 RLSRQLVPVS FSSKNKPPRS SVFSIGGSSS GLYASQKLGK PNILRPQSKF DQRHSQTVPE 720 DEMPEILQGN SSPTTGVKTV SPNRSIIGTE TELDEEETEA AEKSVADGDQ QKNEIQKNEE 780 QTSALPTTPL RLSRQLVPVS FSSKNKPPRS SVFSIGGSSS GLYASQKLGK PNILRPQSKF 840 DQRHSQTVPE DEMPEILQGN SSPTTGVKTV SPNSKRVSPP CTFGSSPGRR SGRKLILQSI 900 PSFPSLTPQH

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence

MASFCEVAVI KVEIAASTGL SLTSHYLAFL DPGQEKGQWV DRILAQSKKL PAWPKCEHGH  60
NASDDLSKPE FSPESGNKVC ASEDAAQVYN NSSEIQEDCV PAVPIGETSV EPPSEHSKFV  120
IELPRNLNYD CGSPDCNTSR CGIIKEDCDS ELAEFSASVA QYVQETSDKC SSDDEAQQQL  180
ICQIEQRKEG TGCDWDSLIS DAADILIFDS PNSTEAFKEL MNHSLDPMTR FSTSIVPHLS  240
QNNIGDEQLV QVIDTVGSGQ QLQIEDHSSQ NGAANDLNET EHMPNHLNEY MVDNPNVKED  300
NKAETSIQLT CKPVINLHRG LRRRCLDFEM TGARRKSFEN VSNFSSSMLS QSNENVTTND  360
KPASMKPGGE SSRCILPGIG LHLNALATTS KDYKIIKNEN LASGRELSFP NSNASIHSPT  420
AAQGSVYESF PSASSERDMD GAENGVQLLQ DASQTSALLA NEDFNQNSPK KKRRRAEHTG  480
EGEACKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCQDCFN KPIHEDTVLA TRKQIESRNP  540
LAFAPKVIRN SDSAAPEYGD ESSKTPASAR HKRGCNCKKS NCLKKYCECY QGGVGCSIGC  600
RCEGCKNAFG TKEGSIIGTE TELDEEETEA AEKSVADGDQ QKNEIQKNEE QTSALPTTPL  660
RLSRQLVPVS FSSKNKPPRS SVFSIGGSSS GLYASQKLGK PNILRPQSKF DQRHSQTVPE  720
DEMPEILQGN SSPTTGVKTV SPNRSIIGTE TELDEEETEA AEKSVADGDQ QKNEIQKNEE  780
QTSALPTTPL RLSRQLVPVS FSSKNKPPRS SVFSIGGSSS GLYASQKLGK PNILRPQSKF  840
DQRHSQTVPE DEMPEILQGN SSPTTGVKTV SPNSKRVSPP CTFGSSPGRR SGRKLILQSI  900
PSFPSLTPQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	470	475	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-118	CPP family protein