PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000007.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 417aa    MW: 49061.9 Da    PI: 9.5172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000007.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.86e-2151452128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.........leleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgk 72 
                                 +GfrFhPtdeel++++L +k +  +          + +++++e+d+y +vePw++ +     +  +++++fF+++++ ++ g 
  Rmu_sc0000007.1_g000006.1   5 LVGFRFHPTDEELISYFLYNKNNVGTmaevpsmatYNYNKIMPELDLYgDVEPWQIWEtygGSELYDQDMFFFTQHKTVNPDGL 88 
                                58*******************99988666666554444458*****99457*****74233223356699************** PP

                        NAM  73 rknr.atksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                r +r + + g+W++    k +++   k++ +g k+ + + +  + + ++ +W ++ey+l
  Rmu_sc0000007.1_g000006.1  89 RIHRkVGSGGTWSEGEPGKLIFDPkhKQKPIGQKRKFRYEN--KGSDHNGSWYLEEYSL 145
                                ****5556889**99999999998666677********983..3344589*******97 PP
2NAM74.72.2e-231863182128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykv.ePwdLpkkvka...eekewyfFskrdkkyatgkrknr.at 78 
                                p+GfrFhPtd+el++++L +k++++    + ++++ e+d++ + ePw++  ++++    +++++fF+k +k++ +g+r  r + 
  Rmu_sc0000007.1_g000006.1 186 PVGFRFHPTDQELISYFLYNKLTEEAslYSYKNIVCEFDLFGTtEPWEIWDMYRGhelCNQNLFFFTKLKKASLNGSRILRkIG 269
                                89********************9999776777789999998654*****74333311244588******************556 PP

                        NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +sg+W++t  +k ++++  ++++g ++ L + +  + + ++ +W ++ey+l
  Rmu_sc0000007.1_g000006.1 270 SSGTWSETDASKLIKDEeWQKHIGRRRKLRYES--KCSKHHGHWYLDEYSL 318
                                69*************9855677********984..4444689*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MPSVLVGFRF HPTDEELISY FLYNKNNVGT MAEVPSMATY NYNKIMPELD LYGDVEPWQI  60
WETYGGSELY DQDMFFFTQH KTVNPDGLRI HRKVGSGGTW SEGEPGKLIF DPKHKQKPIG  120
QKRKFRYENK GSDHNGSWYL EEYSLLLTNS ANYVLCRLRQ NIKTRKKRKE ILLCQESSAL  180
PMSYIPVGFR FHPTDQELIS YFLYNKLTEE ASLYSYKNIV CEFDLFGTTE PWEIWDMYRG  240
HELCNQNLFF FTKLKKASLN GSRILRKIGS SGTWSETDAS KLIKDEEWQK HIGRRRKLRY  300
ESKCSKHHGH WYLDEYSLLD AKSDYVICRL RKNNKSPLPL SEWNGNKRKY SALCQESKEK  360
QKLLSVTNKK LMRKQSNVMM NITNNKNNLS NQPIDQTTRT EPCTKFKLFG VEIGYNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RKKRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-14NAC family protein