PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000007.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 714aa    MW: 78757.8 Da    PI: 4.8596
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000007.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM782.2e-2441431128
                        NAM   1 lppGfrFhPtdeelvveyL..kkkvegkk...leleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrkn 75 
                                +p+GfrFhPtd+el+ +yL  k+kv++ +     ++ v++e+d+y ++ePw++ +    ++  +++++fF+k +k +++g+r n
  Rmu_sc0000007.1_g000005.1   4 VPVGFRFHPTDDELIRHYLylKNKVSKGEdeaAAAAAVVPEFDLYgETEPWNIWEahgGADLYDQDLFFFTKLKKVNPHGTRIN 87 
                                599*************9872256666666554344457*****99568*****74233333366799***************** PP

                        NAM  76 ratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                r++ +g+W++   ++++++      +++ +g k+ + +   ++ + ++  W m+ey+l
  Rmu_sc0000007.1_g000005.1  88 RKIGTGTWSEGEPSRPIFVGeknkkNKTPIGRKRKFRYE--NKLSDQHGCWYMEEYSL 143
                                ******************97555444444********98..45555799*******98 PP
2NAM28.35e-09188221235
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevik 35 
                                p+GfrFhPtd+el++++L +k +gk  +  ++i+
  Rmu_sc0000007.1_g000005.1 188 PVGFRFHPTDQELICYFLYNKNKGKGGRGLSFIA 221
                                89*********************99844333333 PP
3NAM38.63.3e-1248959130128
                        NAM  30 leevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvglkktLv 107
                                ++++++e+d++ ++ePw++ +    ++  +++++fF++ +k +++g+r  r + + g+W++   +k++++  +g+++g k+ L 
  Rmu_sc0000007.1_g000005.1 489 ENQFLHEFDLFgSTEPWEIWEmfrGAELCNQDLFFFTQLKKVNPKGSRIGRkVGSGGTWSEGDVSKPIVDDrTGNQIGRKRKLR 572
                                33468999987367*****75233333355689******************5556899**********99878999******** PP

                        NAM 108 fykgrapkgektdWvmheyrl 128
                                + k  +p+  ++ W ++ey+l
  Rmu_sc0000007.1_g000005.1 573 YEKVGSPH--HACWYLDEYSL 591
                                *9877777..8********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    
MAYVPVGFRF HPTDDELIRH YLYLKNKVSK GEDEAAAAAA VVPEFDLYGE TEPWNIWEAH  60
GGADLYDQDL FFFTKLKKVN PHGTRINRKI GTGTWSEGEP SRPIFVGEKN KKNKTPIGRK  120
RKFRYENKLS DQHGCWYMEE YSLDGIKSAD YVICRLRENN RSGGGTGGNR DLLAISVAAS  180
MEASGPIPVG FRFHPTDQEL ICYFLYNKNK GKGGRGLSFI AEEVAAAAAA EEEEEEIKAL  240
PAPEEPPLET AEAEESKDNG KEEEGHAPPA EAEEEKRKNG GGGDAGAEGE KEKTGQVLAL  300
VSVEEEEEKK KKLICYFLYN KNKGKGGRGL SFIAEEVAAA AAAEEEEEEI KALPAPEEPP  360
LATAAAEAEA EESKDNGKEE EGHAPPAEAE EEKRKSGGGG DAGAEGEKEK TGQVLALVLV  420
EEEEEKKKKK EKEKEKEKEK EKKEGEGQAA PLLLLEYMKN KDEDERGLKL VAREEEAEVV  480
EAVEVCKKEN QFLHEFDLFG STEPWEIWEM FRGAELCNQD LFFFTQLKKV NPKGSRIGRK  540
VGSGGTWSEG DVSKPIVDDR TGNQIGRKRK LRYEKVGSPH HACWYLDEYS LLDADIGDYV  600
ICRLRKNDKL AAAAFSSGEP IHSRKRKSTP STTAAESKHP PATPQESKHP STTAGESKPE  660
EDSSKAKRKR TTGLTQVEEA AADVLMNMAN STLNNSTLKL FGIEIGSTPT IGGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1623628SRKRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.28e-16NAC family protein