PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8517349.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 524aa    MW: 57904.4 Da    PI: 5.7132
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8517349.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.61.7e-1361545241374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l+e+L +cA+a++++d++ +++l+++l++++s +g+p+qRl ay++e+L arla+++s +y++l+++e +   s+e l++++++
  Rmu_co8517349.1_g000001.1 154 LKEVLCACAKALAENDMSTTEWLMSNLRQMVSVSGEPIQRLGAYMLEGLVARLASTGSCIYASLRCKEPA---SAELLSYMHIL 234
                                5789*****************************************************************9...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                +ev+P++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++R+Tg+++++s   +   l  +g+rL+
  Rmu_co8517349.1_g000001.1 235 YEVCPYFKFGYMSANGAIAEAMKDESRVHIIDFQIAQGSQWITLIQALATRPGGPPHIRLTGIDDSASAyaRGGGLALVGKRLS 318
                                *****************************************************************988899999********** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                ++Ae+ +vpfef++ +  + ++++le+L v++gEalaVn++++lh+++desvs++++rd++L++vkslsPkvv++veqe+++n+
  Rmu_co8517349.1_g000001.1 319 RLAESYKVPFEFHA-AGISASEVQLEDLGVQTGEALAVNFAFMLHHMPDESVSIQNPRDRLLRVVKSLSPKVVTLVEQESNTNT 401
                                **************.7889***************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                ++F  rf+e+++y+sa+fds+++ lpre++eri+vE+++l+reivn++aceg er+er+e l+kWr+r+ +aGF+p+pls+ ++
  Rmu_co8517349.1_g000001.1 402 APFCPRFAETFSYFSAVFDSIDVALPREHKERINVEQHCLAREIVNIIACEGVERVERTELLSKWRSRFIMAGFSPYPLSSIIN 485
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +++k+ll+ ++++ y++ee++g+l+lgW++++Lv+ +aWr
  Rmu_co8517349.1_g000001.1 486 ATIKTLLQSYSEK-YTLEERDGALYLGWMNQALVTSCAWR 524
                                ***********65.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    
MRATERHGSV SHRFGEQPVE EPESYGFPPM HNVVIQGTHL SAHSLDQYES SSATSNYHVQ  60
SSPSSLSFSA NGSPTSQPDL QSNQSSGSPI NQSSLTNDGG GLSHKIRELE SVLLGNESDV  120
LDIYGITSQV RHNQVSSEEQ NWKQMMEMIS RGDLKEVLCA CAKALAENDM STTEWLMSNL  180
RQMVSVSGEP IQRLGAYMLE GLVARLASTG SCIYASLRCK EPASAELLSY MHILYEVCPY  240
FKFGYMSANG AIAEAMKDES RVHIIDFQIA QGSQWITLIQ ALATRPGGPP HIRLTGIDDS  300
ASAYARGGGL ALVGKRLSRL AESYKVPFEF HAAGISASEV QLEDLGVQTG EALAVNFAFM  360
LHHMPDESVS IQNPRDRLLR VVKSLSPKVV TLVEQESNTN TAPFCPRFAE TFSYFSAVFD  420
SIDVALPREH KERINVEQHC LAREIVNIIA CEGVERVERT ELLSKWRSRF IMAGFSPYPL  480
SSIINATIKT LLQSYSEKYT LEERDGALYL GWMNQALVTS CAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein