PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8510743.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 723aa MW: 80003.5 Da PI: 5.6356

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8510743.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	369	392	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+++ +H+ + H Rmu_co8510743.1_g000001.1 369 FECHKCSMTFAEKDSYLQHLLSfH 392 89******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MATMALPEAS TRLPLGSLTH IDISTLSQSE LHALSLLSLH RCGTDDLVVP KIDRSQFNES 60 AGSRRQTYSR LRRPQSDAST GHRRRVAGLL STPKVSPPPA QADDPERNEN HAIIAHLKHL 120 ISQDPKFDQI DLEPTSTTTM ASLFLDKKVG IAELGVRKRK RGRKPKVKGS AGSSGEVLGM 180 QIVNKNGAAV DIWALQNSEN PFGDELRRRT LGLETEEELL GFMRELGGQW GSRRKKRKIV 240 DATEFGDALP LGWKLLLGLK RKERRAWIYC RRYISPTGQQ FLSCKEVASF LESFFGLNNA 300 ERQGGDGGEN IQEDCVMATE NHADKNGERR QDVSSSSAIL VSSISNDPEN KVSVSEMENL 360 AEVQIHDLFE CHKCSMTFAE KDSYLQHLLS FHQRTTRRYR LGSTVGDGVI IKDGKYECQF 420 CHKVFLERRR YNGHVGIHVR NYVRRVEESP APTTLQKKIE SPTREGLLSR NSKMDALIEI 480 AQNSILETST AGPNEEGPNE ELKGGTTPDP YINISSETPA SNKLLSNSHL EMNIESKLTE 540 QDLEDLMIDG INEDEQESEH TITDGSMEEA VDAMEVVDDK VNSCLVTTAS SAEEKNGKTS 600 ERSVEINGLV PTSDELDEMP GTKQENASEC PHVHASSNNK SISDVADNVK CAPALEHPSP 660 VEVDKQKHTE PIGSIDQPQP ANDSSLEFHA SNRNELQSGV CDISMSLVRP LLCLPTSNAI 720 LQK

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MATMALPEAS TRLPLGSLTH IDISTLSQSE LHALSLLSLH RCGTDDLVVP KIDRSQFNES  60
AGSRRQTYSR LRRPQSDAST GHRRRVAGLL STPKVSPPPA QADDPERNEN HAIIAHLKHL  120
ISQDPKFDQI DLEPTSTTTM ASLFLDKKVG IAELGVRKRK RGRKPKVKGS AGSSGEVLGM  180
QIVNKNGAAV DIWALQNSEN PFGDELRRRT LGLETEEELL GFMRELGGQW GSRRKKRKIV  240
DATEFGDALP LGWKLLLGLK RKERRAWIYC RRYISPTGQQ FLSCKEVASF LESFFGLNNA  300
ERQGGDGGEN IQEDCVMATE NHADKNGERR QDVSSSSAIL VSSISNDPEN KVSVSEMENL  360
AEVQIHDLFE CHKCSMTFAE KDSYLQHLLS FHQRTTRRYR LGSTVGDGVI IKDGKYECQF  420
CHKVFLERRR YNGHVGIHVR NYVRRVEESP APTTLQKKIE SPTREGLLSR NSKMDALIEI  480
AQNSILETST AGPNEEGPNE ELKGGTTPDP YINISSETPA SNKLLSNSHL EMNIESKLTE  540
QDLEDLMIDG INEDEQESEH TITDGSMEEA VDAMEVVDDK VNSCLVTTAS SAEEKNGKTS  600
ERSVEINGLV PTSDELDEMP GTKQENASEC PHVHASSNNK SISDVADNVK CAPALEHPSP  660
VEVDKQKHTE PIGSIDQPQP ANDSSLEFHA SNRNELQSGV CDISMSLVRP LLCLPTSNAI  720
LQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	262	RRKKRKIVDATEFGDALPLGWKLLLGLKRK
2	234	263	RRKKRKIVDATEFGDALPLGWKLLLGLKRK
3	235	264	RRKKRKIVDATEFGDALPLGWKLLLGLKRK