PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8493965.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 266aa    MW: 27780.2 Da    PI: 8.2822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8493965.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.5e-06525525
                               --SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                               lC+  + t  C++G++C+F H
  Rmu_co8493965.1_g000001.1  5 LCDSVFSTAGCPFGESCHFLH 25
                               7888888889*********** PP
2zf-CCCH26.51.1e-086691227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                               kt+lC+ +     Ck+Gd+C+FaHg+
  Rmu_co8493965.1_g000001.1 66 KTRLCNKYNSAEGCKFGDKCHFAHGE 91
                               8***********************96 PP
3zf-CCCH37.44.1e-12233257126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                y+t+lC++fa+ GtC +G+rC+FaHg
  Rmu_co8493965.1_g000001.1 233 YRTKLCDNFAK-GTCTFGERCHFAHG 257
                                89*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
LIGVLCDSVF STAGCPFGES CHFLHYVPGG YNAVAQVMNL APPPQSSRNF AGPPSHSNGS  60
SAPSVKTRLC NKYNSAEGCK FGDKCHFAHG ERELGKPVSQ SYGHDDPRAV APAPGHMGNW  120
MEPGHAPLQG PASSFGASST AKISVDASLA GAIIGKGGVN SKHICHQTGA KLAIRDHESD  180
PNLRNIELEG TFEQIQQASA LVRELIQSVL MSGPNKTPGR GGPGAPAPPG SNYRTKLCDN  240
FAKGTCTFGE RCHFAHGAAE LRKPGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-68C3H family protein