PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8477681.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 241aa MW: 26529.3 Da PI: 10.015 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.6e-06 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Rmu_co8477681.1_g000001.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP | |||||||
2 | zf-C2H2 | 17 | 1.6e-05 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Rmu_co8477681.1_g000001.1 132 WKCERCSKKYAVQSDWKAHMKTC 154 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MGDLDNSSSL VGSTASGEAT FSEPPAKKKR NLPGMPDPEA EVIALSPKTL MATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVRKRVYVCP ETSCVHHNPT RALGDLTGIK 120 KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTLFSRR DSFITHRAFC 180 DALAEESAKA QTLGSSQLAN PTPSPNGGKA VVVASPPPPP LTPSNNVVSP ALSIQSSGNI 240 K |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-119 | C2H2 family protein |