PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8449587.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 390aa    MW: 43289.7 Da    PI: 6.4321
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8449587.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.11.7e-100293892374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                v++L+++Ae +++g+  laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++  ++ + s+ s    + ++aa+k fs
  Rmu_co8449587.1_g000001.1  29 VDQLVNAAELIETGNPLLAQGILARLNQQLSPIGKPFQRAAFYFKEALELLLNM--NNSHSSANLSPFS---LIYKIAAYKSFS 107
                                789*************************************************98..3344445555555...99********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakf 168
                                e+sP+l+f+++t+NqaIle+veg +rvH+iDfdi++G+QW++++q+ a R+ ++ppsl+iT+++ ++ +++ el  t+e+L++f
  Rmu_co8449587.1_g000001.1 108 EISPVLQFANFTCNQAILESVEGFNRVHVIDFDIGYGGQWASFMQEVALRNgGSPPSLKITAFVCSSMHDEFELAFTQENLKNF 191
                                ***************************************************66688*********9999*************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                                A el++ fe +++  ++l++   + L ++  E +aV + l + ++l++++sl+     vL++vk+lsPk+vv  e+ +d+++ +
  Rmu_co8449587.1_g000001.1 192 ACELNLAFELEIVSIEALNS-GSWPLPLHGSEGVAVAVNLPIASFLNSHLSLPL----VLRFVKQLSPKIVVSLERGSDRTDIP 270
                                ************75555444.589999999999999999999****99999999....************************** PP

                       GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                F +++++a+++ys+l++sl+a   ++ ++ +k+Er ll+++i+++v+  + +   +++   +Wr  + ++GF+p+++s+++++q
  Rmu_co8449587.1_g000001.1 271 FPHQIIQAVHCYSSLLESLDAV-NANLDALQKIERYLLQPSIEKIVMGCHLS--PKRTPTPSWRTLFLSSGFSPLTFSNFTESQ 351
                                *******************887.5666999****************977776..5677799*********************** PP

                       GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                a++l++++++ g++ve+++ slvl+W+++ L+s+S Wr
  Rmu_co8449587.1_g000001.1 352 ADCLVQRTPVGGFHVEKRQSSLVLCWQRKDLISASGWR 389
                                *************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    
MLAAKDKMVN NLEGDKELMN NHQLHQAIVD QLVNAAELIE TGNPLLAQGI LARLNQQLSP  60
IGKPFQRAAF YFKEALELLL NMNNSHSSAN LSPFSLIYKI AAYKSFSEIS PVLQFANFTC  120
NQAILESVEG FNRVHVIDFD IGYGGQWASF MQEVALRNGG SPPSLKITAF VCSSMHDEFE  180
LAFTQENLKN FACELNLAFE LEIVSIEALN SGSWPLPLHG SEGVAVAVNL PIASFLNSHL  240
SLPLVLRFVK QLSPKIVVSL ERGSDRTDIP FPHQIIQAVH CYSSLLESLD AVNANLDALQ  300
KIERYLLQPS IEKIVMGCHL SPKRTPTPSW RTLFLSSGFS PLTFSNFTES QADCLVQRTP  360
VGGFHVEKRQ SSLVLCWQRK DLISASGWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-155GRAS family protein