PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8426689.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 365aa    MW: 41697.4 Da    PI: 4.3016
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8426689.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.67e-2581412128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diy.kvePwdLpk......kvka..eekewyfFskrdkkyatgkrkn 75 
                                p+G+rFhPtd elv +yL+++v+  +   ++ i ++ d y k ePw +        +  +  ee+ +yfF++r+k +++ k+  
  Rmu_co8426689.1_g000001.1   8 PVGYRFHPTDLELVAYYLHNRVAMVDQFRSSPILDCpDFYgKNEPWLIWDmfraqsN--NmkEEETLYFFTHRKKLNPKAKKFD 89 
                                89*******************99988555567888879983569*999532444431..13244466***************** PP

                        NAM  76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                r++ sg+W+a+ +++ v + + ++vg+k+ + +  g++p+ ++  W+m+ey++
  Rmu_co8426689.1_g000001.1  90 RKVGSGTWSAQYSKNVVAADDYSVVGIKREFRYEGGSDPH-QNGAWLMQEYEI 141
                                *************9999999999**********9999998.89********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MMASGAYPVG YRFHPTDLEL VAYYLHNRVA MVDQFRSSPI LDCPDFYGKN EPWLIWDMFR  60
AQSNNMKEEE TLYFFTHRKK LNPKAKKFDR KVGSGTWSAQ YSKNVVAADD YSVVGIKREF  120
RYEGGSDPHQ NGAWLMQEYE ITSHNDLVLC TLRKNPRKLP PPTSPAPLNQ SHIIISNKRK  180
MKFSEGEEDI NTKTESFKRK KTEPPKQKQQ LMLPSTSCLF EQQFDQSKIL FDIDELCYID  240
DQQESNDDLM ASFAPSFVTD DLMASFAPSF VTDDQLEVVE VEKEGSNDDL MASAGQPLSA  300
SDDQIQTVQV DETNNSITNS PNDTSYPYFD PEVEAFFGLT TDDIYDDDDC QFSSSEIQAF  360
LACLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-17NAC family protein