PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8421333.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 447aa    MW: 49158.7 Da    PI: 5.4414
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8421333.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4493.2e-137784411374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl. 83 
                                lv++Ll+cAeav++++l+ a+al++++ +la ++  +m+++a+yf+eALa+r++r        + p+e+s   +s+   +l++ 
  Rmu_co8421333.1_g000001.1  78 LVHTLLACAEAVQQDNLKVADALVKQVGTLAVSQTGAMRKVATYFAEALARRIYR--------VYPQEDSL--VSSYSDILQMh 151
                                689****************************************************........44555553..33333333444 PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                f+e++P+lkf+h+taNqaIlea+++++rvH++Df+++qG+QWpaL+qaLa Rp+gpp +R+Tgvg+p+++++++l+++g++La+
  Rmu_co8421333.1_g000001.1 152 FYETCPYLKFAHFTANQAILEAFATATRVHVVDFGLKQGMQWPALMQALALRPGGPPVFRLTGVGPPQPDNTDALQQVGWKLAQ 235
                                ************************************************************************************ PP

                       GRAS 168 fAeelgvpfefnvl..vakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                fAe++gv+fef++   va++l+dle+++L+v+p   EalaVn+v++lh ll++++++e+    v+  +k ++Pk+v++veqea+
  Rmu_co8421333.1_g000001.1 236 FAETMGVEFEFEFRgfVANSLADLEPSMLDVRPpeVEALAVNSVFELHCLLARPGAIEK----VMASIKAMNPKIVTMVEQEAN 315
                                *******9988764449****************9999**********************....********************* PP

                       GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                hn++ Fl+rf e+l+yys+lfdsle +  +  +e+ ++++++lgr+i+nvvac g +r+erhetl +Wr+rl++aGF+pv+l++
  Rmu_co8421333.1_g000001.1 316 HNGPVFLDRFNESLHYYSSLFDSLEGS--SGPSEDLVMSEVYLGRQICNVVACDGGDRVERHETLTQWRNRLSRAGFEPVHLGS 397
                                ************************999..567999************************************************* PP

                       GRAS 332 kaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++ kqa++ll+ ++ + gy+vee++gsl+lgW++rpL+++SaW+
  Rmu_co8421333.1_g000001.1 398 NVFKQAQTLLALYAgGGGYQVEENNGSLTLGWHTRPLIATSAWQ 441
                                **************9999*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    
QKQKQIETQS RVIYDDNSEY DLRAIPGIAA YPQSQLQTAT EINSKRLKTS TGSASSSSSS  60
IEPRPLVVVD AQDTGVRLVH TLLACAEAVQ QDNLKVADAL VKQVGTLAVS QTGAMRKVAT  120
YFAEALARRI YRVYPQEDSL VSSYSDILQM HFYETCPYLK FAHFTANQAI LEAFATATRV  180
HVVDFGLKQG MQWPALMQAL ALRPGGPPVF RLTGVGPPQP DNTDALQQVG WKLAQFAETM  240
GVEFEFEFRG FVANSLADLE PSMLDVRPPE VEALAVNSVF ELHCLLARPG AIEKVMASIK  300
AMNPKIVTMV EQEANHNGPV FLDRFNESLH YYSSLFDSLE GSSGPSEDLV MSEVYLGRQI  360
CNVVACDGGD RVERHETLTQ WRNRLSRAGF EPVHLGSNVF KQAQTLLALY AGGGGYQVEE  420
NNGSLTLGWH TRPLIATSAW QLASPTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0GRAS family protein