PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8418355.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 105aa    MW: 12221.9 Da    PI: 8.0589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8418355.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-074066127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                               +ktelC +++ +G+C+  d CkFaHg+
  Rmu_co8418355.1_g000001.1 40 PKTELCLNWQDSGYCRCKDHCKFAHGM 66
                               7************************95 PP
2zf-CCCH25.72e-0878102125
                                --S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                ykte+C++++++  C +G rC+F H
  Rmu_co8418355.1_g000001.1  78 YKTEICQYWLAGLPCGFGRRCHFRH 102
                                9**********88**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    
GFTVKEDSNL SLIQASFGNV NKDQKKEGPR ELEVYEQGMP KTELCLNWQD SGYCRCKDHC  60
KFAHGMEELR PVNRHPLYKT EICQYWLAGL PCGFGRRCHF RHTLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-31C3H family protein