PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8349301.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 304aa    MW: 32674.8 Da    PI: 5.638
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8349301.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS158.75e-491473041164
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                lv+lL++cAe v+ gdl+la +++++++ l  + ++g  + ++a yf  AL++r++          ++  ++  +  ++   ++
  Rmu_co8349301.1_g000001.1 147 LVQLLVTCAESVQRGDLALAGSIIETMQALltRVNTGCGIGKVAGYFIDALSRRVFT--------PQSVGSDGGSAHQNELLYH 222
                                689**************************977888899******************9........2222222223555567889 PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164
                                +f+e++P+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g r
  Rmu_co8349301.1_g000001.1 223 YFYEACPYLKFAHFTANQAILEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLR 304
                                9*****************************************************************************9965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MEPYGNSGVV SSSASSSSSS SAASITKPHD MDGYLAEAGY KVRSSDLRHV AQRLERLENV  60
MVNSPNDLAH FASDAVIYNP SDLASWVDSL LSASDLDFPG VIINNHHTAL PTADTWTEIP  120
PIPSAAAPPQ NHHQVTAVME EDSGIRLVQL LVTCAESVQR GDLALAGSII ETMQALLTRV  180
NTGCGIGKVA GYFIDALSRR VFTPQSVGSD GGSAHQNELL YHYFYEACPY LKFAHFTANQ  240
AILEAFHGHD CVHVIDFNLM HGLQWPALIQ ALALRPGGPP LLRLTGIGPP SPDGRDSLRE  300
IGLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-50GRAS family protein