PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8304163.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 274aa    MW: 30625.5 Da    PI: 5.8678
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8304163.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.84.4e-55851891102
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql++fw +q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaa
  Rmu_co8304163.1_g000001.1  85 QLQVFWGNQmqdIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAA 168
                                89*****9988889********************************************************************** PP

                      NF-YC  82 avtrtdifdflvdivprdelk 102
                                a++rtd+fdflvdi+prdelk
  Rmu_co8304163.1_g000001.1 169 AISRTDVFDFLVDIIPRDELK 189
                                ******************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MDHSEQTQQQ QQQQQPVVGV VAGSGQMSYA PPSYQTAPMV ASGPPAVAIP SPTQPPPTFS  60
NSPHQIAYQQ AQHFHSQQQQ QQQQQLQVFW GNQMQDIEQT TDFKNHSLPL ARIKKIMKAD  120
EDVRMISAEA PVIFAKACEI FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV  180
DIIPRDELKE EGLGVTKANI PVVGSAADVP YYYVPPQHPV GAPGMIVGKP VDQATMYGAQ  240
QPRPPMAFMP WAQSQPQQPL PQQQQQTQQQ QTDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.15e-76NF-YC family protein