PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8258885.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 145aa MW: 16276.4 Da PI: 10.5451 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.7 | 3.1e-25 | 4 | 82 | 53 | 127 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127 +++++w+fF++r++++a+g r++r t++gyWkatg+ v+++ ++ ++glk+t+vfy+grap+g+kt+W m+ey+ Rmu_co8258885.1_g000001.1 4 GDQEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPSYVFTSssntNHGAIGLKRTMVFYTGRAPNGSKTEWKMNEYK 82 46789************************************9866555556***************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MCHGDQEQWF FFIPRQESEA RGGRPKRLTT TGYWKATGSP SYVFTSSSNT NHGAIGLKRT 60 MVFYTGRAPN GSKTEWKMNE YKAIDGDNQL QAPSSSNAAP APPLRQEFSL CRVYKKSKCL 120 RAFDRRPSGT GDIMRRPTVT VHLPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-47 | NAC family protein |