PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8256289.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 183aa MW: 20214.7 Da PI: 5.21 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.8 | 1.1e-13 | 55 | 136 | 19 | 99 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivprd 99 elP r+kki+k d d+++i +ea l+s + +lf+ l+ s a e+kr+ +k i +a +r + dflvd+ p + Rmu_co8256289.1_g000001.1 55 LELPTGRVKKIMKLDRDINKINSEALHLVSCSAQLFLQFLAEASGEAAMEKKRKIVKLEHIRTAAKRHrATRDFLVDELPVQ 136 589**********************************************************99988762689*****99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MTRPESSEEN AVGSESEEDN IAPIEIASEE ENAATVQPLS EGEKAKANGL EPIRLELPTG 60 RVKKIMKLDR DINKINSEAL HLVSCSAQLF LQFLAEASGE AAMEKKRKIV KLEHIRTAAK 120 RHRATRDFLV DELPVQSQPS DQKSADRSRS RPVADNPAPA GTRRIDDFFS KPATKSPIEV 180 EES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 2e-44 | NF-YC family protein |